Locus 1034

Sequence ID 2L_DroMel_CAF1
Location 2,917,802 – 2,917,909
Length 107
Max. P 0.653477
window1663

overview

Window 3

Location 2,917,802 – 2,917,909
Length 107
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 65.88
Mean single sequence MFE -16.95
Consensus MFE -3.17
Energy contribution -6.47
Covariance contribution 3.30
Combinations/Pair 1.10
Mean z-score -2.39
Structure conservation index 0.19
SVM decision value 0.25
SVM RNA-class probability 0.653477
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2917802 107 - 22407834
UUCUUAAAACAUGAGCAUUAUUUAGGGUGUUUCAAAGUGUGCAACACUACUUUUAUAGAUAUGUAUUUACAUA--------CACCUUAUCACUUUUAAAGAGUGUCUCCAUUUCC
............(((.......(((((((......((((.....))))...........(((((....)))))--------))))))).(((((.....))))).)))....... ( -18.10)
>DroSec_CAF1 36217 108 - 1
UUCCUAAAAUAUAAGCAAUCCUUAAGGUGUUUAAAACUAUGCAACACUACU-------AUCUGUAUUUGCAUACUUUGCAACACCUUUUCACUUUUGAAGAGUGUCUCCAUUUCC
.......................((((((((..(((.(((((((...(((.-------....))).))))))).)))..))))))))..(((((.....)))))........... ( -21.00)
>DroSim_CAF1 36913 108 - 1
UUCUUAAAAUAUAAGCAUUCCUUAAGGUGUUUAAAACUAUGCAACACUACU-------AUCUGUAUUUGCAUACUUUGCAACACCUUUUCACUUUUGAAGAGUGUCUCCAUUUCC
..............((((((...((((((((..(((.(((((((...(((.-------....))).))))))).)))..))))))))((((....)))))))))).......... ( -23.40)
>DroEre_CAF1 37070 87 - 1
-UCUCAGCAUACAAAACUAAUC-AA-UU--------CAUGGGAAUACUACAUUUU-AU------AUUUGCAUA----------CCCUUUCAAUUUUGAAGAGUGUUCCCAUUGCC
-.....(((.............-..-..--------.(((((((((((...((((-(.------..(((.(..----------....).)))...))))))))))))))))))). ( -14.96)
>DroYak_CAF1 37200 94 - 1
-UCUCAACAUACCAAAAUAACU-AAAUU--------AUUUGCAACACUAAAUUUG-AAAUCCGCAUUUGCAUA----------CCUUUUCACUUUUGAAGAGUGUCACCAUUACC
-.............((((((..-...))--------))))...(((((.......-......((....))...----------...(((((....)))))))))).......... (  -7.30)
>consensus
UUCUUAAAAUAUAAGCAUUACUUAAGGUGUUU_AAACUAUGCAACACUACUUUU__A_AUCUGUAUUUGCAUA________CACCUUUUCACUUUUGAAGAGUGUCUCCAUUUCC
.......................((((((((......(((((((......................)))))))......))))))))..(((((.....)))))........... ( -3.17 =  -6.47 +   3.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:38 2006