Locus 1031

Sequence ID 2L_DroMel_CAF1
Location 2,915,712 – 2,915,824
Length 112
Max. P 0.700449
window1659

overview

Window 9

Location 2,915,712 – 2,915,824
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.92
Mean single sequence MFE -30.27
Consensus MFE -20.28
Energy contribution -21.00
Covariance contribution 0.72
Combinations/Pair 1.08
Mean z-score -1.66
Structure conservation index 0.67
SVM decision value 0.35
SVM RNA-class probability 0.700449
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2915712 112 + 22407834
--UCAGCCAGGAUGUAGGAAAUUUUCCGGUUUUACUGUUGAGCCUCCUGCUGCCAGGAAAUCGCUCCUACUGCUG-CGAGCAAAGAACAGA--AAAGCAGCAAAAAAAAACACACU--C-
--.((((.((((....(((.....)))(((((.......)))))))))))))..((((......))))..(((((-(...(........).--...))))))..............--.- ( -28.50)
>DroSec_CAF1 34158 111 + 1
--UCAGCCAGGAAGUAGGAAAUUUUCCGGUUUUACUGUUGAGCCUCCUGCUGCCAGGAAAUCGCUCCUACUGCUG-CGUUCACAGAACAGA--AAAGCAGCAAAAAA-AACACACU--C-
--.......((.(((((((..(((..(((.....)))..)))..))))))).))((((......))))..(((((-(.(((........))--)..)))))).....-........--.- ( -30.40)
>DroSim_CAF1 34817 110 + 1
--UCAGUCAGGAAGUAGGAAAUUUUCCGGUUUUACUGUUGAGCCUCCUGCUGCCAGGAAAUCGCUCCUACUGCUG-CGUUCAUAGAACAGA--AAAGCAGCAAAAAA--ACACACU--C-
--.......((.(((((((..(((..(((.....)))..)))..))))))).))((((......))))..(((((-(.(((........))--)..)))))).....--.......--.- ( -30.40)
>DroEre_CAF1 35023 101 + 1
--UCAGCCAGGAAGUAGGAAAUUUUCCGGUUUUACUGUUGAGCCUCCUGCUGCCAGGAAAUCGCUCCUACUGCUG-C-----------AGG--AAAGCAGAAAAAAA---CACACCAUCA
--..((((.(((((........)))))))))...(((((.....((((((.((.((((......))))...)).)-)-----------)))--).))))).......---.......... ( -28.00)
>DroYak_CAF1 35151 103 + 1
--UCAGCCAGGAAGUAGGAAAUUUUCCGGUUUUACUGUUGAGCCUCCUGCUGCCAGGAAAUCGCUCCUACUGCUG-CGAGCGCAAAACAGU--AAAGCAGAAAAAAA------------A
--.......(((((........))))).(((((((((((..((.(((((....)))))....(((((.......)-.))))))..))))))--))))).........------------. ( -31.80)
>DroAna_CAF1 19962 114 + 1
AUUCAGUCAGGAAGUAGGAAAUUUUCCGGCUUUA-UGUUGAGCCUCCCGCUGCCAGGAAAUCGGUGUAGCCCCCGUCGGUCGCCGAGCUUUAGAGUGCAGCAAAAAA-UAUAUGUU----
.........(((....(((.....)))(((((..-....)))))))).((((((..(((.((((((..(((......)))))))))..)))...).)))))......-........---- ( -32.50)
>consensus
__UCAGCCAGGAAGUAGGAAAUUUUCCGGUUUUACUGUUGAGCCUCCUGCUGCCAGGAAAUCGCUCCUACUGCUG_CGAUCACAGAACAGA__AAAGCAGCAAAAAA__ACACACU__C_
...(((.(((((....(((.....)))(((((.......)))))))))))))..((((......)))).(((((.....................))))).................... (-20.28 = -21.00 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:34 2006