| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 328,650 – 328,762 |
| Length | 112 |
| Max. P | 0.603940 |
| Location | 328,650 – 328,762 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 87.50 |
| Mean single sequence MFE | -37.78 |
| Consensus MFE | -31.66 |
| Energy contribution | -31.42 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 328650 112 + 22407834 GGGAUCCCUGCAGCACUUCUCCAGCGCUUCGCAGAGAUCAUUCUUUCCAUUUGGGUCUUGAACGAAACAAGUUACCAGCGAUUUGUACAGUUCAUCGUAGUUGCGGGGCUCC .(((.(((((((((((...(((((((...)))(((((....))))).....))))...(((((...(((((((......)))))))...)))))..)).))))))))).))) ( -37.20) >DroSec_CAF1 10402 112 + 1 GGGAUCCCUGCAGCACUUCUCCAGCGCUUCGCAGAGAUCAUUCUUUCCAUUCGGGUCUUGAACAAAACAAGUUACCAGCGAUUUGUACAGUUCAUCGUAGUUGCGGGGCUCA ..((.(((((((((((...(((.(((...)))(((((....)))))......)))...(((((...(((((((......)))))))...)))))..)).))))))))).)). ( -33.90) >DroSim_CAF1 10443 112 + 1 GGGAUCCCUGCAGCACUUCUCCAGCGCUUCGCAGAGAUCAUUCUUUCCAUUCGGGUCUUGAACAAAACAAGUUACCAGCGAUUUGUACAGUUCAUCGUAGUUGCGGGGCUCC .(((.(((((((((((...(((.(((...)))(((((....)))))......)))...(((((...(((((((......)))))))...)))))..)).))))))))).))) ( -35.50) >DroEre_CAF1 10840 112 + 1 GGGAUCCCUGCAGCACUUCUCCAGCGCUUGGCAGAGAUCAUUCUUUCCAUUCGGGUCUUGAACGAAGCAAGUUACCAGCGAUUUGUACAGUUCGUCGUAGUUGCGGGGCUCC .(((.(((((((((((........((..(((.(((((....))))))))..))......((((...(((((((......)))))))...))))...)).))))))))).))) ( -39.00) >DroYak_CAF1 10622 112 + 1 GGGAUCCCUGCAGCACUUCUCCAGCGCCUGGCAGAGAUCGUUCUUUCCAUCCGGGUCCUGAACGAAGCAAGUCACCAGCGACUUGUACAGUUCAUCGUAGUUUCGGGGCUCC .(((.(((((.(((((......((.((((((.(((((....)))))....)))))).))((((...(((((((......)))))))...))))...)).))).))))).))) ( -40.00) >DroAna_CAF1 14676 109 + 1 CGGAUCCUUGCAGCAUUUCUCAUAGGCCUCGCACAUAUCGU---UGCCGUCCUGCUGCUGGACGAAGCACGGUACGAGUGCCUUGUACAGUUCAUCAUAGUUGCGGGGCUCC .(((.(((((((((.........((((((((....((((((---.(((((((.......)))))..)))))))))))).))))((.......)).....))))))))).))) ( -41.10) >consensus GGGAUCCCUGCAGCACUUCUCCAGCGCUUCGCAGAGAUCAUUCUUUCCAUUCGGGUCUUGAACGAAACAAGUUACCAGCGAUUUGUACAGUUCAUCGUAGUUGCGGGGCUCC .(((.(((((((((...((((..((.....)).))))........(((....)))...(((((...(((((((......)))))))...))))).....))))))))).))) (-31.66 = -31.42 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:47 2006