| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,908,138 – 2,908,235 |
| Length | 97 |
| Max. P | 0.961311 |
| Location | 2,908,138 – 2,908,235 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 93.17 |
| Mean single sequence MFE | -28.93 |
| Consensus MFE | -28.62 |
| Energy contribution | -28.40 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.961311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2908138 97 + 22407834 GCAAAAGCGGAGCAAGAAGGUG--GGCACCGAGUUUUGAACUACACAGAACGGAACAUCAUCACAUCGCUGGCAUUUCUUUUUGCCAGUGACCCAGAAA ((....))((.....((.((((--..(.....((((((.......)))))).)..)))).))...(((((((((........))))))))).))..... ( -28.80) >DroSec_CAF1 26663 95 + 1 GCAA-AGCGGAGCAAGAAGGUGUGUGCACCGAGUCUUGAACUACACAGAACUGAACAU---AACAUCGCUGGCAUUUCUUUUUGCCAGUGACCCAGAAA ....-.(..(..(((((.((((....))))...)))))..)..)..............---....(((((((((........)))))))))........ ( -29.00) >DroSim_CAF1 27072 95 + 1 GCAA-AGCGGAGCAAGAAGGUGUGUGCACCGAGUCUUGAACUACACAGAACUGAACAU---CACAUCGCUGGCAUUUCUUUUUGCCAGUGACCCAGAAA ....-.(..(..(((((.((((....))))...)))))..)..)..............---....(((((((((........)))))))))........ ( -29.00) >consensus GCAA_AGCGGAGCAAGAAGGUGUGUGCACCGAGUCUUGAACUACACAGAACUGAACAU___CACAUCGCUGGCAUUUCUUUUUGCCAGUGACCCAGAAA ((....))((..(((((.((((....))))...)))))...........................(((((((((........))))))))).))..... (-28.62 = -28.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:13 2006