Locus 1019

Sequence ID 2L_DroMel_CAF1
Location 2,907,402 – 2,907,514
Length 112
Max. P 0.737911
window1634

overview

Window 4

Location 2,907,402 – 2,907,514
Length 112
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 88.42
Mean single sequence MFE -22.45
Consensus MFE -15.72
Energy contribution -17.12
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.70
SVM decision value 0.44
SVM RNA-class probability 0.737911
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2907402 112 - 22407834
CGCCUCGUAAACUUUUCCUUGCAAGCAGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAUUUUCACACAGCA-CUUUUCCUUGCGAUUCCU-UACUAACUUACCUA
....((((((......((((((.....))))))..(((..((((((((...................))))))))..)))-.......)))))).....-.............. ( -23.01)
>DroSec_CAF1 25923 112 - 1
CGCCUCGUAAACUUUUCCUUGCAAGCAGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAAUUUCACACAGCA-CUUUUCCUAGCGAUUCCU-UACUUACUUACCUA
......((((......((((((.....))))))....(((((.((((((((........(((.....)))........))-)))))).))))).....)-)))........... ( -23.29)
>DroSim_CAF1 26339 112 - 1
CGCCUCGUAAACUUUUCCUUGCAAGCAGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAAUUUCACACAGCA-CUUUUCCUUGCGAUUCCU-UACUUACUUACUUA
(((..((((((.....((((((.....))))))))))))..)))....(((((((............)))))))...(((-........))).......-.............. ( -22.70)
>DroEre_CAF1 26647 97 - 1
CGGCUCGUAAACUUUUCCU-------UGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAAUUUCACACAGCA-CUUUUCCUUGCGAUUCCU-UACUUA--------
..................(-------(((((((...(.(((((.....(((((((............)))))))))))).-)....)))))))).....-......-------- ( -19.80)
>DroYak_CAF1 26838 100 - 1
CGCCUCGUAAACUUUUCCUU------UGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAUUUUCACACAGCAACUUCUCCUGGCGAUUCCUUUACUUA--------
((((..(((((((((.....------...)))))))))(((((.....((((((..............))))))...))))).......)))).............-------- ( -23.44)
>consensus
CGCCUCGUAAACUUUUCCUUGCAAGCAGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAAUUUCACACAGCA_CUUUUCCUUGCGAUUCCU_UACUUACUUAC_UA
....((((((......((((((.....))))))..(((..(((((((.....................)))))))..)))........)))))).................... (-15.72 = -17.12 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:11 2006