Locus 1018

Sequence ID 2L_DroMel_CAF1
Location 2,906,128 – 2,906,246
Length 118
Max. P 0.500000
window1633

overview

Window 3

Location 2,906,128 – 2,906,246
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.75
Mean single sequence MFE -26.12
Consensus MFE -21.62
Energy contribution -22.86
Covariance contribution 1.24
Combinations/Pair 1.05
Mean z-score -1.27
Structure conservation index 0.83
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2906128 118 - 22407834
AGGCAAAGUACUUGGAAAAAUUCAGUCAAAUAUUUAAUGUUUAUUUUGCCAGCUGCUUAGAUUUGUUUAAUGUCACCGCAUCUAAGUGACUUUUGUGGCAUUCUGAAAUCAAAAUACU--
.((((((((..(((((....)))))..((((((...)))))))))))))).........(((((.(..(((((((((((......)))......))))))))..))))))........-- ( -21.40)
>DroSec_CAF1 24635 120 - 1
AGGCAAAGUACUUGGAAAAAUUCAGUCAAAUAUUUAAUGUUUAUUUUGCCAGCUGCUUAGAUUUGUUUAAUGUCACCGCAUCUAAGUGGCUUUUGUGGCAUUCUGAAAUCAAAGCAAUGU
.((((((((..(((((....)))))..((((((...))))))))))))))...(((((.(((((.(..(((((((((((......))))......)))))))..)))))).))))).... ( -27.90)
>DroSim_CAF1 25046 120 - 1
AGGCAAAGUACUUGGAAAAAUUCAGUCAAAUAUUUAAUGUUUAUUUUGCCAGCUGCUAAGAUUUGUUUAAUGUCACCGCAUCUAAGUGGCUUUUGUGGCAUUCUGAAAUCAAAGCAAUGU
.((((((((..(((((....)))))..((((((...))))))))))))))...((((..(((((.(..(((((((((((......))))......)))))))..))))))..)))).... ( -26.10)
>DroEre_CAF1 25384 116 - 1
AGGCAAAGUACUUGGAAAAAUUAAUUCAAAUAUUUAAUGUUUACUUUGCCAGUGGCUUAGACUUGUUUAAUGUCACCGCAUCUCAGUGGCUUUUGUGGCAUUCUGAAAUCAA----AUGU
.(((((((((.....(((.(((......))).)))......))))))))).((((((((((....))))).)))))......((((..(((.....)))...))))......----.... ( -26.70)
>DroYak_CAF1 25572 120 - 1
AGGCAAAGUACUUGGAAAAAUUCAUUCAAAUAUUUAAUGUUUACUUUGCCAGUUGCUUAAAUUUGUUUAAUGUCACCGCAACUUAGUGGCUUUUGUGGCAUUCUGAAAUCAAAGCAAUGU
.((((((((...((((....))))...((((((...)))))))))))))).(((((((..((((.(..(((((((((((......))))......)))))))..)))))..))))))).. ( -28.50)
>consensus
AGGCAAAGUACUUGGAAAAAUUCAGUCAAAUAUUUAAUGUUUAUUUUGCCAGCUGCUUAGAUUUGUUUAAUGUCACCGCAUCUAAGUGGCUUUUGUGGCAUUCUGAAAUCAAAGCAAUGU
.(((((((((.....(((.(((......))).)))......)))))))))...(((((.(((((.(..(((((((((((......)))......))))))))..)))))).))))).... (-21.62 = -22.86 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:10 2006