Locus 1016

Sequence ID 2L_DroMel_CAF1
Location 2,901,471 – 2,901,583
Length 112
Max. P 0.978342
window1629

overview

Window 9

Location 2,901,471 – 2,901,583
Length 112
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 93.29
Mean single sequence MFE -31.66
Consensus MFE -28.72
Energy contribution -28.36
Covariance contribution -0.36
Combinations/Pair 1.14
Mean z-score -1.64
Structure conservation index 0.91
SVM decision value 1.81
SVM RNA-class probability 0.978342
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2901471 112 - 22407834
UCAUGUGCU-------GCGUGUUGUGUGUUGCGGGUGAAGCAACGAAAGGGGCUAAAUUUGUUACUCCGAGUUUGGAACCGCGCGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU
((((((((.-------((((......((((((.......))))))...((..(((((((((......)))))))))..))))))))))).))).......................... ( -33.00)
>DroSec_CAF1 20070 112 - 1
UCAUGUGCU-------GCGUGUUGUGUGUUGCGGGGGAAGCAACGAAAGGGGCUAAAUUUGUUACUUCGAGUUUGGAACCGCGCGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU
((((((((.-------((((......((((((.......))))))...((..(((((((((......)))))))))..))))))))))).))).......................... ( -33.50)
>DroSim_CAF1 20441 112 - 1
UCAUGUGCU-------GCGUGUUGUGUGUUGCGGGGGAAGCAACGAAAGGGGCUAAAUUUGUUACUUCGAGUUUGGAACCGCGCGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU
((((((((.-------((((......((((((.......))))))...((..(((((((((......)))))))))..))))))))))).))).......................... ( -33.50)
>DroEre_CAF1 20586 119 - 1
UCAUGUGCUGUGUGCUGUGUGUUGUGUGUUGCGGGGUAAGCAAGGAAAGGGGCUAAAUUUGUUACUUCAAGUUUGGAACCGUGCGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU
....(..((((.((((.((((........)))).)))).)))......((..(((((((((......)))))))))..)))..)(((((((....(....)...)))))))........ ( -30.60)
>DroYak_CAF1 20727 110 - 1
UCAUGUGCU-------GUGUGUUGUGUGUUGCGGGGAAAGCAGUGAAAGGGGCUAAAUUUGUUACUUCAAGUUUGGAACCG--CGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU
((((.((((-------...(.((((.....)))).)..))))))))..((..(((((((((......)))))))))..)).--.(((((((....(....)...)))))))........ ( -27.70)
>consensus
UCAUGUGCU_______GCGUGUUGUGUGUUGCGGGGGAAGCAACGAAAGGGGCUAAAUUUGUUACUUCGAGUUUGGAACCGCGCGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU
((((...((.......((((((....((((((.......))))))...((..(((((((((......)))))))))..))..)))))).......))..))))................ (-28.72 = -28.36 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:06 2006