Locus 1014

Sequence ID 2L_DroMel_CAF1
Location 2,899,541 – 2,899,655
Length 114
Max. P 0.690832
window1627

overview

Window 7

Location 2,899,541 – 2,899,655
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.04
Mean single sequence MFE -30.20
Consensus MFE -29.32
Energy contribution -29.32
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.12
Structure conservation index 0.97
SVM decision value 0.33
SVM RNA-class probability 0.690832
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2899541 114 - 22407834
UUUCAUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGC------CACCGUCAUCGUCUAUCUGGAUUUUGCGGAAUUU
..........((..((((....((((((..(((..(......)..)))..)))))).))))...))(((.........))------).(((.((..((((....))))..)))))..... ( -29.70)
>DroSec_CAF1 18113 114 - 1
UUUCAUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGC------CACCGCCAUCGUCUAUCUGGAUUUUGCGGAAUUU
..........((..((((....((((((..(((..(......)..)))..)))))).))))...))(((.........))------).((((.(..((((....))))..)))))..... ( -29.70)
>DroSim_CAF1 18472 114 - 1
UUUCAUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGC------CACCGCCAUCGUCUAUCUGGAUUUUGCGGAAUUU
..........((..((((....((((((..(((..(......)..)))..)))))).))))...))(((.........))------).((((.(..((((....))))..)))))..... ( -29.70)
>DroEre_CAF1 18528 119 - 1
-UUUCUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGCCAGCGCCACCGCCAUCGUCUAUCUGGAUUUUGCGGAAUUU
-((((((...............((((((..(((..(......)..)))..))))))))))))....(((.........))).......((((.(..((((....))))..)))))..... ( -30.96)
>DroYak_CAF1 18689 113 - 1
-UUUCUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGC------CACCGCCAUCGUCUAUCUGGAUUUUGCGGAAUUU
-((((((...............((((((..(((..(......)..)))..))))))))))))....(((.........))------).((((.(..((((....))))..)))))..... ( -30.96)
>consensus
UUUCAUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGC______CACCGCCAUCGUCUAUCUGGAUUUUGCGGAAUUU
.....((.((((..(.....((((((((..(((..(......)..)))..))))).))).....)..)))).))..............(((.((..((((....))))..)))))..... (-29.32 = -29.32 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:04 2006