Locus 1012

Sequence ID 2L_DroMel_CAF1
Location 2,898,366 – 2,898,486
Length 120
Max. P 0.530625
window1623

overview

Window 3

Location 2,898,366 – 2,898,486
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.82
Mean single sequence MFE -32.99
Consensus MFE -23.94
Energy contribution -24.14
Covariance contribution 0.20
Combinations/Pair 1.09
Mean z-score -1.64
Structure conservation index 0.73
SVM decision value -0.01
SVM RNA-class probability 0.530625
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2898366 120 - 22407834
GACUGACUAACCCUCUUCAUUCACAGUCGCACCCCUCUCUUUCGCACAUCCUACAGUCGUCUCUGUCACGCAACUGGGGCAACUCGGUGCGAUUUCUCAGUGGAAUUCAGGGGGUUCGGU
.(((((...(((((((...((((((((((((((..........((.......((((......))))...))....(((....)))))))))))).....)))))....)))))))))))) ( -38.40)
>DroSec_CAF1 16965 120 - 1
GACUGACUAACCCUCUUCAUUCACAGUCGCACCUCUCUCUUUCGCACAUCCUCUAGCCGUCUCUGUCACGCAACUGGGGCAACUCGGUGCGAUUUCUCAGUGGAAUUCAGGGGGUUCGGU
.(((((...(((((((...((((((((((((((..........((..........)).(((((.((......)).))))).....))))))))).....)))))....)))))))))))) ( -37.20)
>DroSim_CAF1 17336 120 - 1
GACUGACUAACCCUCUUCAUUCACAGUCGCACCCCUCUCUUUCGCACAUCCUCUAGCCGUCUCUGUCACGCAACUGGGGCAACUCGGUGCGAUUUCUCAGUGGAAUUCAGGGGGUUCGGC
..((((...(((((((...((((((((((((((..........((..........)).(((((.((......)).))))).....))))))))).....)))))....))))))))))). ( -35.60)
>DroEre_CAF1 17342 110 - 1
GACUGACUAACCCUCUUCAUUCACUCACGCAUCCCUCUCUUUCCCACCUGCUCUAUCCAUCUCUGUCACGCAACUGGAGCAACUCGGUGCGAUUUCUCA----------GAGGGUUCGGU
.(((((...(((((((............................(((((((((((...................)))))))....)))).((....)))----------))))))))))) ( -24.01)
>DroYak_CAF1 17515 110 - 1
GACUGACUAACCCUCUUCAUUCACUGUCGCAACCCUCUCUUUCCCACAUCCUCUAGCCGUCUCUGUCACGCAACUGGGGCAACUCGGUGCGAUUUCUCA----------GAGGGUUCGGU
.(((((...(((((((.........(((((.........................((.((.......)))).((((((....))))))))))).....)----------))))))))))) ( -29.74)
>consensus
GACUGACUAACCCUCUUCAUUCACAGUCGCACCCCUCUCUUUCGCACAUCCUCUAGCCGUCUCUGUCACGCAACUGGGGCAACUCGGUGCGAUUUCUCAGUGGAAUUCAGGGGGUUCGGU
.(((((...((((((......................................(((......)))...((((.(((((....)))))))))..................))))))))))) (-23.94 = -24.14 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:00 2006