| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,898,224 – 2,898,328 |
| Length | 104 |
| Max. P | 0.937817 |
| Location | 2,898,224 – 2,898,328 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.38 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -22.18 |
| Energy contribution | -22.70 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937817 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2898224 104 + 22407834 ACAUUUCGCUUAUGAAAAUGU--AUUCAUUGAGUGGAGAUGUAUGUCGCCGCCGGCAAGGGUU--------CCAUUCCCA------UUGCCAUUUCCAUUUCCAUUCUCGUAAAUACAAA ...(((((....))))).(((--(((.((.(((((((((((...((....)).((((((((..--------.....))).------))))).....)))))))))))..)).)))))).. ( -29.70) >DroSec_CAF1 16807 120 + 1 ACAUUUCGCUUAUGAAAAUAAAAGUUCAUUGAGUGGAGAUGUUUUUCGCCACCGGCAAGGGUUAGACAUUCCCAUUCCCAUUCCCGUUGCCAUUUCCAUUUCCAUUCUCGUAAAUACAAA ..((((((.((((....)))).........(((((((((((......(....)((((((((.....................))).))))).....))))))))))).)).))))..... ( -24.00) >DroSim_CAF1 17184 114 + 1 ACAUUUCGCUUAUGAAAAUGAAAAUUCAUUGAGUGGAGAUGUUUGUCGCCACCGGCAAGGGUUAGACAUUUCCAUUCCCA------UUGCCAUUUCCAUUUCCAUUCUCGUAAAUACAAA .........((((((.(((((....)))))(((((((((((..((....))..((((((((...((....))....))).------))))).....)))))))))))))))))....... ( -29.40) >DroEre_CAF1 17198 109 + 1 ACAUUUCGCUUAUAAAAAUGU--AUUCAUUGAGUGGAGAUGUGUGUCGC---CGGCAAGGGUUAGACAUUCCCAUUCUCA------UACCCAUUCCCAUUUUCAUUCUCGUAAAUACAAA ..................(((--(((.((.(((((((((((..(((...---..))).((((.(((.........)))..------.)))).....)))))))))))..)).)))))).. ( -22.90) >DroYak_CAF1 17381 97 + 1 ACAUUUCGCUUAUGAAAAUGU--AUGCAUUGAGUGGAGAUGUGUGUCGC---CGGCAAGGGUUAGACAUUCCCA------------------UUCCCAUUUCCAUUCUCGUAAAUACAAA .........((((((.((((.--...))))(((((((((((.(((((((---(......)))..))))).....------------------....)))))))))))))))))....... ( -24.60) >consensus ACAUUUCGCUUAUGAAAAUGU__AUUCAUUGAGUGGAGAUGUGUGUCGCC_CCGGCAAGGGUUAGACAUUCCCAUUCCCA______UUGCCAUUUCCAUUUCCAUUCUCGUAAAUACAAA .........((((((.((((......))))(((((((((((..(((((....))))).(((.........))).......................)))))))))))))))))....... (-22.18 = -22.70 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:59 2006