| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,897,319 – 2,897,419 |
| Length | 100 |
| Max. P | 0.593182 |
| Location | 2,897,319 – 2,897,419 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 91.14 |
| Mean single sequence MFE | -32.76 |
| Consensus MFE | -28.16 |
| Energy contribution | -28.36 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2897319 100 + 22407834 GUGUGUGCGUGCGUAUCUGUGUGUCCGCAUAUGGCAGCGAGUUGGUAUUGGUACUUUCGGAUUACAAUGUAAUGCUCCUCUUCCGCUGCCACUCGCCGCC---------- (((((..((..((....))..))..)))))..(((.((((((.((((.(((.......(.(((((...))))).).......))).)))))))))).)))---------- ( -36.04) >DroSec_CAF1 15930 100 + 1 GUGUGUGCGUGCGUAUCUGUGUGUCCGCAUAUGGCAGCGAGUUGGUAUUGGUACUUUCGGAUUACAAUGUAAUGCUCCUCUACCGCUGCCACUCGCCGCC---------- (((((..((..((....))..))..)))))..(((.((((((.((((.(((((.....(.(((((...))))).).....))))).)))))))))).)))---------- ( -38.50) >DroSim_CAF1 16292 100 + 1 GUGUGUGCGUGCGUAUCUGUGUGUCCGCAUAUGGCAGCGAGUUGGUAUUGGUACUUUCGGAUUACAAUGUAAUGCUCCUCUUCCGCUGCCACUCCCCGCC---------- (((((..((..((....))..))..))))).((((((((.(..((((....))))..)(.(((((...))))).)........)))))))).........---------- ( -30.90) >DroEre_CAF1 16336 95 + 1 UUGUGUGCGUGCGUAUCUGUGUGUCCGCAUAUGGCAGCGAGUUGGUAUUGGUACUUUCGGAUUACAAUGUAAUGCUCCUCUUCCGCUGGCU--CGCC------------- (..((((((..((........))..))))))..)..((((((..((...((.......(.(((((...))))).).......))))..)))--))).------------- ( -28.94) >DroYak_CAF1 16459 108 + 1 CUGUGUGCGUGCGUAUCUGUGUGUCCGCAUAUGGCAGCGAGUUGGUAUUGGUACUUUCGGAUUACAAUGUAAUGCUCCUCUUCCGCUGCCU--CGCCCCCUCUUAUCCCC ..(((((((..((........))..)))))))(((((((.(..((((....))))..)(.(((((...))))).)........))))))).--................. ( -29.40) >consensus GUGUGUGCGUGCGUAUCUGUGUGUCCGCAUAUGGCAGCGAGUUGGUAUUGGUACUUUCGGAUUACAAUGUAAUGCUCCUCUUCCGCUGCCACUCGCCGCC__________ ..(((((((..((........))..)))))))(((((((.(..((((....))))..)(.(((((...))))).)........))))))).................... (-28.16 = -28.36 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:58 2006