Locus 1009

Sequence ID 2L_DroMel_CAF1
Location 2,896,180 – 2,896,291
Length 111
Max. P 0.752879
window1620

overview

Window 0

Location 2,896,180 – 2,896,291
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 70.41
Mean single sequence MFE -26.44
Consensus MFE -15.78
Energy contribution -16.48
Covariance contribution 0.70
Combinations/Pair 1.48
Mean z-score -1.37
Structure conservation index 0.60
SVM decision value 0.48
SVM RNA-class probability 0.752879
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2896180 111 + 22407834
GUUAAACUGGACGCUUCCAGCUACGCUCUUCCUCUUUU--CCAUUUUCCCAUCCCCUCUGG-------CCGCCCAGUCGCUACGUUUCCUUGCCACUUCCGGUGGUGAGACACGGAGGUC
......(((((....)))))..................--........((.(((..(((.(-------(((((.(((.((...........)).)))...)))))).)))...))))).. ( -27.10)
>DroSec_CAF1 14766 111 + 1
GCUAAACUGGACGCUUCCAGCUACGCUCUUCCCCUUCU--CCCUUUUUCCCUCCCCUCUCU-------CCCACCAGUCACUCCGUUUCCUUGCCACUUCCGGUGGUGAGACAUGGAGGUC
((....(((((....)))))....))............--.........(((((....(((-------((((((.(......((......))......).))))).))))...))))).. ( -27.40)
>DroSim_CAF1 15164 113 + 1
GCUAAACUGGACGCUUCCAGCAACGCUCUUCCCCUUUUCCCCCUUUUUCCCUCCCCUCUGC-------CCAACCAGUCACUCCGUUUCUUUGCCACUUCCGGUGGUGAGACAUGGAGGUC
((....(((((....)))))....)).......................(((((...(((.-------.....))).......(((((...(((((.....))))))))))..))))).. ( -26.30)
>DroEre_CAF1 15234 117 + 1
GCUAAACUGGACGCUUCCAGCUCCGCUCCUCCCCCUUU--CCCAU-CUCCUUCCCCACUGCCACCCUGCCACUCAGUCACUCUGUAUCCUUGCCACUUCCGGUGGUGAGACACGGGGGUC
((....(((((....)))))....))....(((((...--.....-...........................(((.....)))....((..((((.....))))..))....))))).. ( -29.60)
>DroYak_CAF1 15331 110 + 1
GCUAAACUGGACGCUUUCAGCUUAGUUCUUCCCCUUUU----------ACUUCCCCUCGGCCACCAUGCCACUCAGUCACUCUGUUUCCUUGCCACUUCCGGUGGUGAGACACGGAGGUC
(((((.(((((....))))).)))))............----------..........(((......))).........((((((...((..((((.....))))..))..))))))... ( -29.80)
>DroAna_CAF1 11403 101 + 1
AGCGAACUGGCCGUUUUCUAUCUCAUGCCCACCCAUAG--CCAUCGUCCCAGUCCCUCCGC-------CCUC-------CUCUGGCUCUGAAAAACUUCCGGUGGUGAAUUA--GUCG-C
.((((.((((.((....((((.............))))--....))..))))((((.((((-------(...-------....)))...(((....))).)).)).))....--.)))-) ( -18.42)
>consensus
GCUAAACUGGACGCUUCCAGCUACGCUCUUCCCCUUUU__CCCUUUUUCCAUCCCCUCUGC_______CCACCCAGUCACUCCGUUUCCUUGCCACUUCCGGUGGUGAGACACGGAGGUC
((....(((((....)))))....)).....................................................((((((...((((((((.....))))))))..))))))... (-15.78 = -16.48 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:57 2006