Locus 1005

Sequence ID 2L_DroMel_CAF1
Location 2,891,611 – 2,891,706
Length 95
Max. P 0.999517
window1609

overview

Window 9

Location 2,891,611 – 2,891,706
Length 95
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.37
Mean single sequence MFE -28.01
Consensus MFE -20.40
Energy contribution -20.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.05
Structure conservation index 0.73
SVM decision value 3.68
SVM RNA-class probability 0.999517
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2891611 95 + 22407834
UUUUCUUGGCCUGCUCUUUUCCGCCAACUCAGACGGUUGGCUGAAAGGCCACC--------------CACCGC-----------CCCCAUUUUCAGCCAUCCGCCGUCGUCUGUUGUCCC
.....(((((............)))))....((((((((((((((((((....--------------....))-----------).....)))))))))...))))))............ ( -29.20)
>DroSim_CAF1 10569 95 + 1
CUUUCUUGGCCUGCUCUUUUCCGCCAACUCAGACGGUUGGCUGAAAGGCCACC--------------CACCGC-----------CCCCAUUUUCAGCCAUCCGCCGCCGUCUGUUGUCCC
.....(((((............)))))..((((((((((((((((((((....--------------....))-----------).....)))))))))......))))))))....... ( -31.00)
>DroEre_CAF1 10528 120 + 1
UUUUCUUGGCCUGCUCUUUUCCGCCAACUCAGACGGUUGGCUGAAAGGCCACCAGCCACCCAACACCCACCACCACCCACCAGCACCCAUUUUCAAACAUCCGCUGUCGUCUGUCGUCCC
.....(((((............)))))..(((((((.((((((.........)))))).))...................((((..................))))..)))))....... ( -26.07)
>DroYak_CAF1 10614 100 + 1
UUUUCUUGGCCUGCUCUUUUCCGCCAACUCAGACGGUUGGCUGAAAGGCCACCACCCACCCACUACCCACCGCC----------CCCCAUUUUCAGCCAUCCGCUG----------UCCC
.....(((((............)))))..(((.(((.((((((((((((......................)))----------......))))))))).))))))----------.... ( -25.75)
>consensus
UUUUCUUGGCCUGCUCUUUUCCGCCAACUCAGACGGUUGGCUGAAAGGCCACC______________CACCGC___________CCCCAUUUUCAGCCAUCCGCCGUCGUCUGUUGUCCC
......((((((......(((.(((((((.....))))))).)))))))))..................................................................... (-20.40 = -20.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:47 2006