| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,889,460 – 2,889,560 |
| Length | 100 |
| Max. P | 0.655443 |
| Location | 2,889,460 – 2,889,560 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 91.50 |
| Mean single sequence MFE | -26.08 |
| Consensus MFE | -19.74 |
| Energy contribution | -20.58 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2889460 100 + 22407834 CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUGUUUCCCGAAAAGGGGGUU-----UUCGGAAGAUUCCAAUCUGCCAUCGAAACCAAAUCUAAAAUUAACU .((((((((((..(((..(((....(((((((.....(((((.....)))))))-----)))))..)))..)))..))))).))))).................. ( -24.70) >DroSec_CAF1 8238 101 + 1 CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUGUUUCCCGUAAAGGGGUUUU----UUUUGAAGAUUCCAAUCUGCCAUCGAAACCAAAUCUAAAAUUAACA .((((((((((..(((..(((....(..(((((((....(((.....))))))))----))..)..)))..)))..))))).))))).................. ( -22.00) >DroSim_CAF1 8231 105 + 1 CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUGUUUCCCGUAAAGGGGGUUUUUUUUUUGGAAGAUUCCAAUCUGCCAUCGAUACCAAAUCUAAAAUUAACA ...((((((((..(((..(((....(..((((((...(((((.....)))))...))))))..)..)))..)))..))))).))).................... ( -26.80) >DroEre_CAF1 8330 104 + 1 CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUAUUUACCGAAAGGGGGUUU-UUUUUUUGGAAGAUUCCAAUCUGCCAUCGAAACGAAAUCUAAAAUUAACU .((((((((((..(((..(((....(..((((((...(..((....))..)...-))))))..)..)))..)))..))))).))))).................. ( -27.00) >DroYak_CAF1 8429 100 + 1 CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUAUUUCCCGAAAGGGGGGUU-----UUUGGAAGAUUCCAAUAUGCCAUCGAAACCGAAUCUAAAAUUAACU .(((((((((((.(((..(((....(..(((....((..(((....)))..)))-----))..)..)))..))).)))))).))))).................. ( -29.90) >consensus CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUGUUUCCCGAAAAGGGGGUU_____UUUGGAAGAUUCCAAUCUGCCAUCGAAACCAAAUCUAAAAUUAACU .((((((((((..(((..(((....(((((.......(((((.....))))).......)))))..)))..)))..))))).))))).................. (-19.74 = -20.58 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:42 2006