| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,267 – 11,376 |
| Length | 109 |
| Max. P | 0.979074 |
| Location | 11,267 – 11,376 |
|---|---|
| Length | 109 |
| pre Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 64.69 |
| Mean single sequence MFE | -18.40 |
| Consensus MFE | -11.58 |
| Energy contribution | -10.47 |
| Covariance contribution | -1.11 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11267 109 - 22407834 UAACCU---ACUAAU---UUU----UUUUUUUUACCU-AACAGAAAUACGACGGAAACGAGUACUAGUUCUGUUGUAAUUAAAUCUAUAAUUACAAACAUUUCUCAUGAAAAAACGAACG ......---......---(((----.((((((((...-(((((((.(((..((....)).)))....)))))))(((((((......)))))))............)))))))).))).. ( -19.40) >DroWil_CAF1 5064 113 - 1 -UAUAU---AUUAAUUACUCUUCGUUUCGAUC--CA-UUUCAGUAAUACUACGGAAACCAAUACCAGUUCUGUAGUCAUCAAAUCCAUUAUCACAAACAUAUCACACGAAAAGACAAAUG -.....---........((.(((((...((..--..-..))......(((((((((.(........)))))))))).............................))))).))....... ( -13.50) >DroAna_CAF1 68 117 - 1 UAACCUCAAGCUGAC---CCUCCCAUUCAAUUUACUGAAACAGCAACACCACGGAGACGAGCACCAGCUCUGUGGUCAUCAAGUCCGUCAUAACGAGCAUAUCCCACGAAAAGACGAACG .........((((..---.......((((......)))).))))...(((((((((.(........))))))))))......((.((((....((...........))....)))).)). ( -22.30) >consensus UAACCU___ACUAAU___UCU_C__UUCAAUUUACA__AACAGAAAUACCACGGAAACGAGUACCAGUUCUGUAGUCAUCAAAUCCAUAAUAACAAACAUAUCACACGAAAAGACGAACG ...............................................(((((((((.(........))))))))))............................................ (-11.58 = -10.47 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:22:56 2006