Inst. f. Informatik   Uni Leipzig

Inferring Non-Coding RNA Families and Classes by Means of Structure-Based Clustering: Supplemental Material

Sebastian Will, Kristin Missal, Ivo L. Hofacker,
Peter F. Stadler, Rolf Backofen

  • Ciona intestinalis ncRNA candidates conserved in C. intestinalis and C. savignyi (JGI 1.0)
    [Supplemental material of publication "Non-coding RNAs in Ciona intestinalis"]
  • Ciona intestinalis ncRNA candidates mapped to assembly JGI 2.0 (2544 of 3332 candidates exactly found in JGI 2.0)
    [bed format]
  • Software LocARNA (version 0.975)
  • Complete Tree of the 3332 Ciona intestinalis ncRNA candidate sequences in JGI 1.0
    [newick format (including annotations found by blast versus Noncode DB)]
  • mir-126 candidate ci_555813
    [trimmed alignment with known mir-126 miRNAs] [predicted secondary structure of ci_555813]