README

miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
bantam • ALNFASTAGFFPDFTREE
iab-4 • Tanzer:05a ALNFASTAGFFPDFTREE
let-7 ▬ ▬ ▬ ▬ ▬ ▬ ♦* • • +98 Bompfuenewerer:05aALNFASTAGFFPDFTREE
100 ▬ ▬ ▬ ▬ ▬ ▬ ♦* • +99 ALNFASTAGFFPDFTREE
125 ▬ ▬ ▬ ▬ ▬ ▬ ♦* • • ALNFASTAGFFPDFTREE
lin-4 • ALNFASTAGFFPDF
lsy-6 • ALNFASTAGFFPDF
1 ▬ ▬ ▬ ▬ ▬ ▬ ▬* • • • ° +206 ALNFASTAGFFPDFTREE
133 ▬ ▬ ▬ ▬ ▬ ▬ ♦* • • ° ALNFASTAGFFPDFTREE
2 ▬ • ALNFASTAGFFPDFTREE
13 • ALNFASTAGFFPDFTREE
71 • ALNFASTAGFFPDF
3 ▬ +309ALNFASTAGFFPDFTREE
4 • ALNFASTAGFFPDFTREE
5 • ALNFASTAGFFPDFTREE
6 ▬ ALNFASTAGFFPDFTREE
286 • ALNFASTAGFFPDFTREE
7 ▬ ▬ ▬ ▬ ▬ ▬ ♦* • • ALNFASTAGFFPDFTREE
8 • • • • • • • • •' +429ALNFASTAGFFPDFTREE
9 ▬ ▬ ▬ ▬ ▬ ▬ ♦* • ▬ • ° +79 ALNFASTAGFFPDFTREE
306 • ALNFASTAGFFPDFTREE
10 ▬ ▬ ▬ ▬ ▬ ▬ ♦* • • Tanzer:05aALNFASTAGFFPDFTREE
11 • ALNFASTAGFFPDFTREE
12 • ALNFASTAGFFPDFTREE
304 • ALNFASTAGFFPDFTREE
13 → mir-2 cluster
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
14 • ALNFASTAGFFPDFTREE
15 ▬ ▬ ▬ ▬ ▬ ▬ ♦* +16,195 ALNFASTAGFFPDFTREE
16 mir-15 paralog
17 ▬ ▬ ▬ ▬ ▬ ▬ ♦* +18,20,93,106 Tanzer:04aALNFASTAGFFPDFTREE
18 mir-17 paralog
19 ▬ ▬ ▬ ▬ ▬ ▬ ♦* ALNFASTAGFFPDFTREE
20 mir-17 paralog
92 ▬ ▬ ▬ ▬ ▬ ▬ ♦* • ▬ • +25,235ALNFASTAGFFPDFTREE
21 • • • • • - ♦* ALNFASTAGFFPDFTREE
22 • • • • • • ♦* ALNFASTAGFFPDFTREE
23 ▬ ▬ ▬ ▬ • ▬ ♦* ALNFASTAGFFPDFTREE
24 ▬ ▬ ▬ ▬ • • ♦* ALNFASTAGFFPDFTREE
27 ▬ ▬ ▬ ▬ ▬ • ♦* ALNFASTAGFFPDFTREE
25 mir-92 paralog → mir-17 cluster
26 ▬ ▬ ▬ ▬ • • ♦* ALNFASTAGFFPDFTREE
27 → mir-23 cluster
♠ 28 ▬ ▬ ▬ ▬ +151 LINE L2 ALNFASTAGFFPDFTREE
29 ▬ ▬ ▬ ▬ ▬ ▬ ♦* • +285 ALNFASTAGFFPDFTREE
30 ▬ ▬ ▬ ▬ ▬ ▬ ♦* ALNFASTAGFFPDFTREE
31 • • • • • • •* • ▬ ALNFASTAGFFPDFTREE
32 • • • • • ALNFASTAGFFPDFTREE
33 • • • • • • ♦ • • ALNFASTAGFFPDFTREE
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
34 ▬ ▬ ▬ ▬ ▬ • •* • • ALNFASTAGFFPDFTREE
277 • ALNFASTAGFFPDFTREE
35 • ALNFASTAGFFPDF
36 • ALNFASTAGFFPDF
37 © FASTAGFF
38 • ALNFASTAGFFPDF
39 • ALNFASTAGFFPDF
40 • ALNFASTAGFFPDF
41 • ALNFASTAGFFPDF
42 • ALNFASTAGFFPDF
43 • ALNFASTAGFFPDF
44 • ALNFASTAGFFPDF
45 ▬ ALNFASTAGFFPDF
46 • ALNFASTAGFFPDF
281 ▬ ▬ •' ALNFASTAGFFPDFTREE
47 • ALNFASTAGFFPDF
48 • ALNFASTAGFFPDF
241 • ALNFASTAGFFPDF
49 • ALNFASTAGFFPDF
50 • ALNFASTAGFFPDF
51 • ALNFASTAGFFPDF
52 • ALNFASTAGFFPDF
53 © FASTAGFF
232 ▬ ALNFASTAGFFPDF
54 © FASTAGFF
55 • ALNFASTAGFFPDF
56 © FASTAGFF
57 • ALNFASTAGFFPDF
58 • ALNFASTAGFFPDF
270 © FASTAGFF
59 © FASTAGFF
60 • ALNFASTAGFFPDF
61 • ALNFASTAGFFPDF
250 • ALNFASTAGFFPDF
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
62 • ALNFASTAGFFPDF
63 © FASTAGFF
64 • ALNFASTAGFFPDF
65 © FASTAGFF
66 © FASTAGFF
229 © FASTAGFF
67 • ALNFASTAGFFPDF
68 © FASTAGFF
69 © FASTAGFF
70 • ALNFASTAGFFPDF
71 → mir-2 cluster
72 • ALNFASTAGFFPDF
73 • ALNFASTAGFFPDF
74 • ALNFASTAGFFPDF
75 • ALNFASTAGFFPDF
76 © FASTAGFF
77 ▬ ALNFASTAGFFPDF
78 © FASTAGFF
79 mir-9 paralog → mir-9 cluster
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
80 • ALNFASTAGFFPDF
238 © FASTAGFF
81 • ALNFASTAGFFPDF
82 • ALNFASTAGFFPDF
83 • ALNFASTAGFFPDF
84 • ALNFASTAGFFPDF
85 • ALNFASTAGFFPDF
86 • ALNFASTAGFFPDF
87 • • ALNFASTAGFFPDFTREE
90 • ALNFASTAGFFPDF
92 → mir-17 cluster
93 mir-17 paralog → mir-17 cluster
♠ 95 ▬ ▬ • • LINE L2 ALNFASTAGFFPDFTREE
96 • • • • - • ♦* ALNFASTAGFFPDFTREE
182 • • • • - • ♦* ALNFASTAGFFPDFTREE
183 • • • • • • ♦* • ALNFASTAGFFPDFTREE
98 let-7 paralog
99 mir-100 paralog → let-7 cluster
100 → let-7 cluster
101 ▬ ▬ ▬ ▬ • ▬ ▬* ALNFASTAGFFPDFTREE
103 ▬ ▬ ▬ ▬ ▬ ▬ ▬* =107(rc) ALNFASTAGFFPDFTREE
105 ▬ • ▬ ALNFASTAGFFPDFTREE
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
106 mir-17 paralog → mir-17 cluster
107 r.c. of mir-103ALNFASTAGFFPDFTREE
108 r.c. of mir-365
122 • • • • • • •* ALNFASTAGFFPDFTREE
124 ▬ ▬ ▬ ▬ ▬ ▬ ♦* •/▬ • • • ALNFASTAGFFPDFTREE
125 → let-7 cluster
126 • • • • • • •* ALNFASTAGFFPDFTREE
127 • • • ALNFASTAGFFPDFTREE
136 • • • ALNFASTAGFFPDFTREE
128 ▬ ▬ ▬ ▬ ▬ ▬ ▬* ALNFASTAGFFPDFTREE
129 ▬ ▬ ▬ ▬ - ▬ ♦* ALNFASTAGFFPDFTREE
130 ▬ ▬ ▬ ▬ ▬ ▬ ♦* +301 ALNFASTAGFFPDFTREE
132 ▬ ▬ ▬ ▬ - ▬ ♦* +212 ALNFASTAGFFPDFTREE
133 → mir-1 cluster
134 • • • Onishi:05
154 ▬ ▬ ▬ +300, 323, 329, 369, 377, 381, 382, 409, 410
368 ▬ ▬ ▬ +376
299 • • •
379 ▬ ▬ ▬ +380,411
412 • • •
135 ▬ ▬ ▬ ▬ ▬ ▬ ▬* ALNFASTAGFFPDFTREE
136 → 127 cluster
137 • • • • • ▬ ♦* ALNFASTAGFFPDFTREE
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
138 ▬ ▬ ▬ • ▬ ▬ ▬* ALNFASTAGFFPDFTREE
139 • • • • • • •* ALNFASTAGFFPDFTREE
140 • • • • • • •* ALNFASTAGFFPDFTREE
141 ▬ ▬ ▬ ▬ ▬ ▬ ▬* +200 ALNFASTAGFFPDFTREE
142 • • • • • • ♦* ALNFASTAGFFPDFTREE
143 • • • • • • •* ALNFASTAGFFPDFTREE
145 • • • • - • •* ALNFASTAGFFPDFTREE
144 • • • • • • •* ALNFASTAGFFPDFTREE
145 → mir-143 cluster
146 • • • • • • * ALNFASTAGFFPDFTREE
147 • • human, dogALNFASTAGFFPDF
148 ▬ ▬ ▬ ▬ • ▬ ▬* +152 ALNFASTAGFFPDFTREE
149 • • • ALNFASTAGFFPDFTREE
150 • • • * ALNFASTAGFFPDFTREE
151 mir-28 paralog
152 mir-148 paralog
153 ▬ ▬ ▬ ▬ • ▬ ♦* ALNFASTAGFFPDFTREE
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
154 → mir-134 cluster
155 • • • • • • •* ALNFASTAGFFPDFTREE
181 ▬ ▬ ▬ ▬ ▬ ▬ ♦* +213 ALNFASTAGFFPDFTREE
182 → mir-96 cluster
183 → mir-96 cluster
184 • • • • • - ♦* • • ALNFASTAGFFPDFTREE
185 • • • ALNFASTAGFFPDFTREE
186 • • • • ALNFASTAGFFPDFTREE
187 • • • • • • •* ALNFASTAGFFPDFTREE
188 • • • ALNFASTAGFFPDFTREE
190 • • • • • - ♦* ALNFASTAGFFPDFTREE
191 • • • • ALNFASTAGFFPDFTREE
425 • • • • ALNFASTAGFFPDFTREE
192 ▬ ▬ ▬ • • - •* +215 ALNFASTAGFFPDFTREE
194 ▬ ▬ ▬ • • • •* ALNFASTAGFFPDFTREE
193 • • • • • - ♦* ALNFASTAGFFPDFTREE
194 → mir-192 cluster
195 mir-15 paralog
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
196 ▬ ▬ ▬ ▬ ▬ ▬ ♦* Tanzer:05a ALNFASTAGFFPDFTREE
197 • • ALNFASTAGFFPDFTREE
198 • ALNFASTAGFFPDF
199 ▬ ▬ ▬ ▬ ▬ • ▬* ALNFASTAGFFPDFTREE
200 mir-141 paralog
201 • ALNFASTAGFFPDF
202 • • • • • ▬ • ALNFASTAGFFPDFTREE
203 • • • • • • •* ALNFASTAGFFPDFTREE
204 ▬ ▬ ▬ ▬ ▬ ▬ ▬* +211 ALNFASTAGFFPDFTREE
205 • • • • ▬ • •* ALNFASTAGFFPDFTREE
206 mir-1 paralog
207 • • • ALNFASTAGFFPDFTREE
208 • • • • ALNFASTAGFFPDFTREE
210 • • • • - • •* • ALNFASTAGFFPDFTREE
211 mir-204 paralog
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
212 mir-132 paralog
213 mir-181 paralog
214 • • • • - • ♦* ALNFASTAGFFPDFTREE
215 mir-192 paralog
216 • • • • • • •* ALNFASTAGFFPDFTREE
217 • • • • • • •* ALNFASTAGFFPDFTREE
218 ▬ ▬ ▬ ▬ ▬ ▬ •* ALNFASTAGFFPDFTREE
219 ▬ ▬ ▬ ▬ • • ♦* • ALNFASTAGFFPDFTREE
♠ 220 tubulinsALNFASTAGFFPDF
221 ▬ ▬ ▬ ▬ ▬ ▬ ♦* +222 ALNFASTAGFFPDFTREE
222 mir-221 paralog
223 • • • • • • •* ALNFASTAGFFPDFTREE
224 • • • ALNFASTAGFFPDFTREE
228 • ALNFASTAGFFPDF
229 → mir-64 cluster
230 • ALNFASTAGFFPDF
231 • ALNFASTAGFFPDF
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
232 → mir-51 cluster
233 • ALNFASTAGFFPDF
234 • ALNFASTAGFFPDF
235 mir-92 paralog Tanzer:04a
236 • ALNFASTAGFFPDF
237 © FASTAGFF
238 → mir-80 cluster
239 ▬ ALNFASTAGFFPDFTREE
240 • ALNFASTAGFFPDF
241 → mir-48 cluster
242 © FASTAGFF
243 © FASTAGFF
244 • ALNFASTAGFFPDF
245 • ALNFASTAGFFPDF
246 • ALNFASTAGFFPDF
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
247 © FASTAGFF
248 • ALNFASTAGFFPDF
249 • ALNFASTAGFFPDF
359 © FASTAGFF
250 → mir-61 cluster
251 • ALNFASTAGFFPDF
252 • ALNFASTAGFFPDF
253 • ALNFASTAGFFPDF
254 • ALNFASTAGFFPDF
255 • ALNFASTAGFFPDF
256 © FASTAGFF
257 © FASTAGFF
258 © FASTAGFF
259 • ALNFASTAGFFPDF
260 © FASTAGFF
261 © FASTAGFF
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
262 © FASTAGFF
263 ▬ ALNFASTAGFFPDFTREE
264 © FASTAGFF
265 © FASTAGFF
266 © FASTAGFF
267 © FASTAGFF
268 • ALNFASTAGFFPDF
269 © FASTAGFF
270 → mir-58 cluster
271 © FASTAGFF
272 © FASTAGFF
273 © FASTAGFF
274 • ALNFASTAGFFPDFTREE
275 • ALNFASTAGFFPDFTREE
305 • ALNFASTAGFFPDFTREE
276 ▬ ALNFASTAGFFPDFTREE
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
277 → mir-34 cluster
278 • ALNFASTAGFFPDFTREE
279 • ALNFASTAGFFPDFTREE
280 • ALNFASTAGFFPDFTREE
281 → mir-46 cluster
282 • ALNFASTAGFFPDFTREE
283 • ALNFASTAGFFPDFTREE
284 • ALNFASTAGFFPDFTREE
285 mir-29 paralogVert. Inv.Vert. Inv.
286 → mir-3 cluster
287 • ALNFASTAGFFPDFTREE
288 • ALNFASTAGFFPDFTREE
289 • ALNFASTAGFFPDFTREE
290 ▬ ▬ ▬ +291--295,371--373 Houbaviy:05aALNFASTAGFFPDFTREE
291 mir-290 paralog
292 mir-290 paralog
293 mir-290 paralog
294 mir-290 paralog
295 mir-290 paralog
296 • • • ALNFASTAGFFPDFTREE
298 • ALNFASTAGFFPDF
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
♠ 297 ▬ low compl. ALNFASTAGFFPDFTREE
298 → mir-296 cluster
299 mir-154 paralog→ mir-134 cluster
300 mir-154 paralog→ mir-134 cluster
301 mir-130 paralog
302 ▬ ▬ ▬ ▬ • ALNFASTAGFFPDFTREE
367 • • • • • ALNFASTAGFFPDFTREE
303 • FASTAGFF
304 → mir-12 cluster
305 → mir-275 cluster
306 → mir-9 cluster
307 • ALNFASTAGFFPDFTREE
308 • ALNFASTAGFFPDFTREE
309 mir-3 paralog → mir-3 cluster
310 • ALNFASTAGFFPDF
311 • ALNFASTAGFFPDF
312 • ALNFASTAGFFPDF
313 • FASTAGFF
314 • ALNFASTAGFFPDF
315 • ALNFASTAGFFPDFTREE
316 • ALNFASTAGFFPDF
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
317 • ALNFASTAGFFPDFTREE
318 • ALNFASTAGFFPDF
320 ▬ • • ALNFASTAGFFPDFTREE
322 • • • ALNFASTAGFFPDFTREE
323 mir-154 paralog→ mir-134 cluster
324 • • • ALNFASTAGFFPDFTREE
♠ 325 • • • LINE L2 ALNFASTAGFFPDFTREE
326 • • • ALNFASTAGFFPDFTREE
♠ 327 ▬ LINE L2 ALNFASTAGFFPDF
328 • • • ALNFASTAGFFPDFTREE
329 mir-154 paralog→ mir-134 cluster
330 • • • ALNFASTAGFFPDFTREE
331 • • • ALNFASTAGFFPDFTREE
♠ 333 • B2-related Tanzer:05a FASTAGFF
335 • • • ALNFASTAGFFPDFTREE
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
336 • ALNFASTAGFFPDF
337 • • ALNFASTAGFFPDFTREE
338 • • • • • - ♦* ALNFASTAGFFPDFTREE
339 • • • ALNFASTAGFFPDFTREE
♠ 340 • • • ALNFASTAGFFPDFTREE
♠ 341 • ALNFASTAGFFPDF
342 • • • ALNFASTAGFFPDFTREE
343 • ALNFASTAGFFPDF
344 ▬ ALNFASTAGFFPDF
345 • • • ALNFASTAGFFPDFTREE
346 • • • ALNFASTAGFFPDFTREE
347 ? rat only
349 • ALNFASTAGFFPDF
350 (▬) • • insertion ALNFASTAGFFPDFTREE
351 • ALNFASTAGFFPDF
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
352 ? rno-mir-352FASTA
353 • ALNFASTAGFFPDF
354 • ALNFASTAGFFPDF
355 • ALNFASTAGFFPDF
356 • ALNFASTAGFFPDF
357 ▬ ALNFASTAGFFPDF
358 • ALNFASTAGFFPDF
359 → mir-249 cluster
360 • ALNFASTAGFFPDF
361 • • • ALNFASTAGFFPDFTREE
365 ▬ ▬ ▬ • • • •* =108rc ALNFASTAGFFPDFTREE
367 → mir-302 cluster
368 → mir-134 cluster
369 mir-154 paralog → mir-134 cluster
370 • • • ALNFASTAGFFPDFTREE
371 mir-290 paralog → mir-290 cluster
372 mir-290 paralog → mir-290 cluster
373 mir-290 paralog → mir-290 cluster
374 ▬ ▬ ▬ ALNFASTAGFFPDFTREE
421 • • • ALNFASTAGFFPDFTREE
375 • • • • • - ♦* ALNFASTAGFFPDFTREE
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
376 mir-168 paralog → mir-134 cluster
377 mir-154 paralog → mir-134 cluster
378 • • • ALNFASTAGFFPDF
379 → mir-134 cluster
380 mir-379 paralog → mir-154 cluster
381 mir-154 paralog → mir-134 cluster
382 mir-154 paralog → mir-134 cluster
383 • • • • • • ALNFASTAGFFPDFTREE
384 • • • ALNFASTAGFFPDFTREE
392 © FASTAGFF
409 mir-154 paralog → mir-134 cluster
410 mir-154 paralog → mir-134 cluster
411 mir-379 paralog → mir-134 cluster
412 → mir-134 cluster
421 → mir-374 cluster
422 • • ALNFASTAGFFPDF
423 • • • ALNFASTAGFFPDFTREE
424 = mir-322
425 → mir-191 cluster
427 • frog only FASTAGFF
428 • frog only FASTAGFF
429 mir-8 paralog
miR Pr Ro Eu Md Gg Xt Tf b.d. Ar Ne Sm PF Remark AlignmentFasta fileGFF fileConsensus structureTree
♠ 430 ▬ zebrafish onlyALNFASTAGFFPDF
448 • • • ALNFASTAGFFPDFTREE
449 • • • • ALNFASTAGFFPDFTREE
450 ▬ ▬ ▬ ALNFASTAGFFPDFTREE