> Dr_cdx-4_IIa_1  Dr_cdx4    NP_571184.1
MYVGYLLEKEASMYHQGAVRRSGISLPPQNFVSTPQYSDFTGYH
HVPNMETHAQSAGAWGAPYGAPREDWGAYSLGPPNSISAPMSNSSPGPVSYCSPDYNT
MHGPGSAVLPPPPENIPVAQLSPERERRNSYQWMSKTVQSSSTGKTRTKEKYRVVYTD
HQRLELEKEFHFNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKLIKKKLGQSD
GSGGSVHSDPGSVSPLPVRVTESFRYTRFSVSSTNERLAVHEEHTASYCHSVNSNLDH
PTLTEHSNTLKGQNQTWSKRITNY

> Dr_cdx-4_IIa_2 Dr_cad1    AAH76488.1 (+manuel edits)
MYVGYLLEKEAS
MYHQGAVRRSGISLPPQNFVSTPQYSDFTGYHHVPNMETHAQSA
GAWGAPYGAPREDWGAYSLGPPNSISAPMSNSSPGPVSYCSPDYNTMHGPGSAVLPPP
PENIPVAQLSPERERRNSYQWMSKTVQSSSTGKTRTKEKYRVVYTDHQRLELEKEFHF
NRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKLIKKKLGQSDGSGGSVHSDPGS
VSPLPVPGSLSPSDIHGSLYPAQMNALPSMRNIQQVTVTQ

> Tr_cdx-4_IIa Tr_cdx4 NEWSINFRUG00000131564.
MYVGYILDKESGMYHQGPVRRSSINLPPQNFVSTPQYPDFTGYHHVPNMDTHAQSAGSWG
SSYGAPREDWGAYSLGPPNTIPAPMSNSSPGQVPYCSPEYSHMHPPGSAALQPPPENVSV
AQLSPDRERLSFQWMNKTAQSSSTGKTRTKEKYRVVYTDHQRLELEKEFHFNRYITIRRK
SELAVSLGLSERQVKIWFQNRRAKERKLIKKKLGQSDGSGGSVHSDPGSVSPLPRFSQSH
GRARFSVPSPGDEPPPIYQEYTASDCGPVCSPLDHHNITEHSDTPTGQGQS

> Ol_cdx-4_IIa_X 14:04:15|GENSCAN_predicted_peptide_1|266_aa
MYVGYLLDKESGMYHQGPVRRSSISLPPQNFVSTQQYPDFTGYHHVPNMDTHTQSASSWG
PSYGGPREDWGTYGLGPPNAIPPPMSNSSSAQGPYCTSEYSHMHPPGATVLQPPPDNVSV
SQLSPERERRSSYQWMSKTAQASSTGKTRTKEKYRVVYTDHQRLELEKEFHFNRYITIRR
KSELAVNLGLSERQVKIWFQNRRAKERKLIKKKLGQSDGSSGSVHSDPGSVSPLPVPGSL
SPTDMHGSMYPPQGMSTLPSIRNIQQ



> Tn_cdx-2_Ib_X.fa 14:09:49|GENSCAN_predicted_peptide_1|265_aa
MYVSYLQLDKDPSMYAHQNPVTRHPGLSLSPQNFAVPAPPQYPDFAGYHHHSINNELHPA
QQAGPGGGGWNPAYPPPPPPPTRDEWSPHHYVAAAAADRAPGAPPPRPPCPERPPEFPGQ
SSALLNASAGQLSPGSPQRRTAYDWIRRSSAPPCNPNGKTRTKDKYRVVYTDHQRLELEK
EFHYSKYITIRRKSELATALSLSERQVKIWFQNRRAKERKINKKKLQQPASSTTTPTPPT
STGLHGNSGSSVAMVTSSSSSSNGL

> Ol_cdx-2_Ib_X.fa 14:17:26|GENSCAN_predicted_peptide_1|115_aa
XGKTRTKDKYRVVYTDHQRLELEKEFHYSKYITIRRKAELATALSLSERQVKIWFQNRRA
KERKINKKKLQQPASSTTTPTPPTGNGGGTSGAGIHGNGSNSVAMVTSSSGSNGL

> Tr_cdx NEWSINFRUP00000131006 (+manuel edits)
MYVSYLQLDKDPT
MYPHQNAVTRHPGLSLSPQNFGVPPPPQYTDFAGYHHHGISNELHPAQQAGPGSGGWNPA
YPPPPPPTRDECPPEFPGQPPALLNASAGQLSPGSPQRRNAYDWIRRSSAPPCNPNGKTR
TKDKYRVVYTDHQRLELEKEFHYSKYITIRRKSELATALSLSERQVKIWFQNRRAKERKI
NKKKLQQPASSTTTPTPPASTGASLHGNGGSSVAMVTSSSGSNGLVSPSSLPLNIKEEY


> Tr_cdx-1_IVa Tr_cdx1 NEWSINFRUG00000146043 
MYNSQPVRHLAQALAVNSQYIPGPYDPFSGYHHFPGIAEPPASAWNSVYAPREEFPFGYG
TGSSPSGGQVSFSSAELTVPPSAGGGASFSTYDPVSDQESFIFKKRPQESIRPTASAGKT
RTKDKYRVVYTDKQRMELEREFQSNRYITMRRKAELSITLGLSER
QIKIWFQNRRAKERKMNRKKLQHSQQASTTTPASPGLAEPVEAHPGMSPNGFFSDTLS

> Tn_cdx-1_IVa_X.fa 14:10:54|GENSCAN (+manuel edits)
MYNSQPVRHLAQALAVNSQYIPGPYEPFSGYHHFPGLADPSPAGAWNSVYAPREEFPFGY
ATGSSPSPGQVSFSSAELSGTPTATSGGSFPTYDPPDQDPFFFKRRPQEPSRPTPSAGKT
R
TKDKYRVVYTDRQRLELEKEFQSNRYITMRRKAELSLELGLSER
X
IKIWFQNRRAKERKINRKRLQHSSPASTTTLASPGPAGSAEAQPGMSPNGFFSGSV

> Ol_cdx-1_IVa_X.fa 14:25:15|GENSCAN_predicted_peptide_1|197_aa
MYPNSQSVRHPAQTLSLNSQYLPPAYDFTGYHHHHHHVPGVIDPTAGTWNPAYAHREEYP
YSFPGSSPSALQASFTSQELGGAPSPPGGGSLTPYNFLCAQEPFSSRRSPEAIRQSASGG
KTRTKDKYRVVYTDHQRLELEKEFQYNRYITMRRKSELSLALSLSER
QVKIWFQNRRAKERKMTRKKLQHSQQASTTTPTPPVLGGHTDAHAAPSPSSNMVSDIKSE


> Dr_Cdx1a   BAC54033.2 (+manuel edits)
MYGNPARHLNLSQPHLNVYPSAPYPDYSGYHPGP
ALGNDLHHTGSSWSPGFGPGSRDDWPPLYGHGTGHSLPANGVEVSVLPSVDQGLLSGA
PVDREEPQDWMRRSAVPTNP
GGKTRTKDKYRVVYSDVQRLELEKEFHFSRYITIRRKA
ELAGTLNLSERQVKIWFQNRRAKERKMNKKRLQQVQQSSSGLANTTTVSSSDSGLMTD
NISSSIKEEY


> Xt_cdx4    NP_989417.1
MNITCGRQAMHKDVTMYPLSVRSASNNHSAQNYASNQPYFNYVT
YHHVPPMDEQGQPCGVWGPQYGSPREQWNSYGAGPSNTNMAQSSDLSPNQFAYNSSGY
SSPHPSGTGILHSVDLSHTAANSPSDLSQNSYEWMGKTVQSTSTGKTRTKEKYRVVYT
DHQRLELEKEFHYSRYITIRRKTELAASLRLSERQVKIWFQNRRAKERKLFKKKMNQF
DGICSVQSDSSSASPNPLCDSVVHTDMSGSLYQPPPIALNGL

> Xt_cdx1    NP_989416.1
MYVGYLLDKDNNMYPNPVRHPGLNLNPQNYVPAPPQYSDFPSYH
HVPGINSDPHHGQPGGTWSSYTPSREDWHPYGPGPGASSANPAQISFSPSDYNPVQPP
GPGLLPPSLNSSVSPLSPSAQRRNLYEWMRRTGVPTSTNSNGKTRTKDKYRVVYTDHQ
RLELEKEFHYSRYITIRRKAELAASLALTERQVKIWFQNRRAKERKVNKKKMQQQSQQ
ASTTTPTPPSVGTTAGMGGLCSSSSSNSNLVSPSSMPIKEEYLS

> Xt_cad1    NP_989209.1
MYVSYLLEKDAAMYPGSMRAHPGLQNYPAAPQYPDYGSYHGMGL
DHGAPSSGSSAGWITPYGPPRDEWGVHPTYSPGHTHINPSPVGNMAFSPDYSPAQVQG
QPCVGVLPAGPPPQLSPGSEDGHRRHHYEWLRKPVSQASTGSKTRTKDKYRVVYTDQQ
RLELEKEFHYSRYITIRRKAELAANLGLSERQVKIWFQNRRAKERKITKKRIQQTQTG
QNGPDTLSPEPSITHHMIPHATSNVGGLPNTVTQ



> Gg_HMD2 ENSGALP00000012387
MYVSSLLDKETSMYPGPARCSNNNLPVQNFVPAPPYSDYMGYHHVPAPDSHGQPAGAWGP
HYGPQREDWNAYGPCPGPSGTAAAAQLSGSSPGQGSYSPAEYSSLHPAAPGGLPPAGTVG
TQQVSPTNQRHSSYEWMRKTVPTNTTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIR
RKSELAANLGLSERQVKIWFQNRRAKERKIIKKKISQFDGSGGSVQSDSGSLSPNEITSS
LFPPPHGINVLQSADIHQVIVSE

> Gg_HMD1  ENSGALP00000033729
MYVGYLLDKDTNMYPSPVRHPSLNLNPQNYVPGPPQYSDFASYHHVPGINNDPHHGQPAA
AWGSPYTPAKEDWHSYGTAAASAATNPGQFGFSPPDFNPMQPHAGSGLLPPAISSSVPQL
SPNAQRRTPYEWMRRSIPSTSSSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKA
ELAAALGLTERQVKIWFQNRRAKERKVNKKKLQQQSQPTSTTTPTPPAVGTPGPMGTLCS
GSAPSLVSSSPLTIKEEFMP

> Gg_cdx2 ENSGALP00000027561
MYVSYLLDKDGPMYPGPVRHSGGLNLAAQNFVGAAQYADYGGYHVNLDGAQSPGPAWPAP
YAAPLRDDWGAYGQGAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHAGLA
PQCSAGGMQPTKAPPPPPPPPKPPPLSPGGQRRGLCEGVRKPAQAPLGSQVKTRTKDKYR
VVYTDHQRLELEKEFHYSRYITIRRKAELASSLGLSERQVKIWFQNRRAKERKINKKKLQ
QARRRGAAQPHRPSASRPRGPPPAGLGPAAPQ


> Ccarp_cdx  X80668
MYVGYLLDKEGSMYHQGSVRRSGISLPPQNFVSTPQYSDFTGYH
HVPNMDTHAQSAGAWGPPYGAPREDWGAYSLGPPNTISAPMSSSSPGQVSYCSSDYNA
MHGPGSAVLPPPPENISVGQLSPERERRNSYQWMSKTVQSSSTGKTRTKEKYRVVYTD
HQRLELEKEFHFNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKLIKKKLGVSD
GSGGSVHSDPGSVSPLPVPGVTESVRHTRFSVPTPRNERLTIYEEHTASYCHSVNSNL
KDPTLTEHSNTLKGQNRSGPLAWTKRITNYYTTGIKARVVDYHRRITS

> Omy_cdx AAR09044.1 | caudal-type homeobox protein 1 [Oncorhynchus mykiss]
MWDPLDKEGSMYHPGPLRRSGINIPPQNFVSTPQYSDFTGYHHVPNMDTHTQSSGAWGAPYVAPREDWGA
YSLGPPNTIPTPMNNSSPGQVSYCSPEYNPMHAPGSAVLQPPTDNISVAQLSPDRERRNSSYQWMNKTVQ
SSSTGKTRTKEKYRVVYTDHQRLELEKEFHFNRYITIRRKSELAGNLGLSERQVKIWFQNRRAKERKLIK
KKMGSDGSGGSVHSDPGSVSPLPVPGSLSPSDIHGSLYPPPGMNNLPSIRNIQQVTVTQ

> Hs_cdx1   U51095
MYVGYVLDKDSPVYPGPARPASLGLGPANYGPPAPPPAPPQYPD
FSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVP
APPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDKYRVV
YTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQ
QQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLATSSPMPVKEEFLP

> Hs_Cdx4   AF029879
MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNF
AAAPAFSHYMGYPHMPSMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVT
SSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWM
RKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVK
IWFQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIE
IQQVIVSE

> Hs_Cdx2  Y13709.
MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYH
VAAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPA
AAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGG
QRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAE
LAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLR
SVPEPLSPVSSLQASVSGSVPGVLGPTGGVLNPTVTQ

