A. Tanzer, P.F. Stadler: Evolution of MicroRNAs Located Within Hox Gene Clusters

Andrea Tanzer, Chris T. Amemiya, Chang-Bae Kim and P.F. Stadler:
Evolution of MicroRNAs Located Within Hox Gene Clusters
Supplemental Material

Source and Location of mir-196 Homologs

miRNA Length Location from to Rfam name

Bt1-196 111 AC129955.8 120601 120711

Bt2-196 110 AC129956.6 105839 105948

Cf1-196 110 AACN010130133.1 972 863

Cf2-196 111 AACN010525685.1 537 647

Cp1-196 110 AC146360.2 91205 91314

Cp2-196 109 AC147494.2 43458 43350

DrAa-196 109 ctg12365 4483 4591

DrAb-196 110 ctg12151 1623054 1622945

DrCa-196 110 ctg10694 193530 193421

DrCb-196 110 NA8968 23236 23345

Fc-196 111 AC129971.3 77685 77795

TrAa-196 109 scaffold_47 192599 192491

TrBa-196 112 scaffold_1439 21379 21268

TrCa-196 110 scaffold_285 219072 218963

Ga1-196 109 AC148579.4 73169 73061

Ga2-196 110 AC148581.3 6765 6874

Gg1-196 110 AADN01010462.1 12326 12217 gga-mir-196-2

Gg2-196 109 AADN01059571.1 3531 3639 gga-mir-196-3

Gg3-196 111 AADN01087955.1 3739 3849 gga-mir-196-1

HfB-196 108

HfM-196 111 AF224262.1 4253 4363

HsA-196 109 Chr. 7 26951464 26951356 hsa-mir-196b

HsB-196 111 Chr. 17 47184577 47184467 hsa-mir-196a-1

HsC-196 110 Chr. 12 52671789 52671898 hsa-mir-196a-2

LmA-196 110 AC147788.1 11777 11668

LmB-196 110

LmC-196 109

MmA-196 109 Chr. 6 52700951 52700843 mmu-mir-196b

MmB-196 111 Chr. 11 95848777 95848887 mmu-mir-196a-1

MmC-196 110 Chr. 15 105070838 105070947 mmu-mir-196a-2

MsA-196 109 AF089743.1 3384 3492

Og1-196 109 AC148952.1 29644 29752

On-196 109 AF533976.1 31691 31799

Ph1-196 109 AC116608.1 92959 93067

Ph2-196 111 AC116664.1 86742 86852

Ph3-196 110 AC117539.6 139363 139472

Pm-196 113 AF464190.1 7441 7553

PsA-196 111 AC132195.4 6829 6939

Pt1-196 109 AACZ01044449.1 3857 3749

Pt2-196 111 AACZ01045598.1 14404 14514

Pt3-196 110 AACZ01304541.1 350 241

RnA-196 109 Chr. 4 80809018 80808910 rno-mir-196b

RnB-196 111 Chr. 10 85010304 85010414

RnC-196 110 Chr. 7 141815461 141815570 rno-mir-196a

Ss1-196 109 AC129963.2 39514 39622

Ss2-196 111 AC129965.3 56129 56239

Ss3-196 110 AC145073.2 121042 121151

TnAa-196 109 FS_CONTIG_2737_1 573 681

TnAb-196 109 FS_CONTIG_1169_2 10381 10489

TnCa-196 111 FS_CONTIG_20444_1 1773 1663

XtA-196 110 scaffold_20070 10446 10337

XtB-196 110 scaffold_11960 5644 5753

miRNA	Length	Location	from	to	Rfam name
Bt1-196	111	AC129955.8	120601	120711
Bt2-196	110	AC129956.6	105839	105948
Cf1-196	110	AACN010130133.1	972	863
Cf2-196	111	AACN010525685.1	537	647
Cp1-196	110	AC146360.2	91205	91314
Cp2-196	109	AC147494.2	43458	43350
DrAa-196	109	ctg12365	4483	4591
DrAb-196	110	ctg12151	1623054	1622945
DrCa-196	110	ctg10694	193530	193421
DrCb-196	110	NA8968	23236	23345
Fc-196	111	AC129971.3	77685	77795
TrAa-196	109	scaffold_47	192599	192491
TrBa-196	112	scaffold_1439	21379	21268
TrCa-196	110	scaffold_285	219072	218963
Ga1-196	109	AC148579.4	73169	73061
Ga2-196	110	AC148581.3	6765	6874
Gg1-196	110	AADN01010462.1	12326	12217	gga-mir-196-2
Gg2-196	109	AADN01059571.1	3531	3639	gga-mir-196-3
Gg3-196	111	AADN01087955.1	3739	3849	gga-mir-196-1
HfB-196	108
HfM-196	111	AF224262.1	4253	4363
HsA-196	109	Chr. 7	26951464	26951356	hsa-mir-196b
HsB-196	111	Chr. 17	47184577	47184467	hsa-mir-196a-1
HsC-196	110	Chr. 12	52671789	52671898	hsa-mir-196a-2
LmA-196	110	AC147788.1	11777	11668
LmB-196	110
LmC-196	109
MmA-196	109	Chr. 6	52700951	52700843	mmu-mir-196b
MmB-196	111	Chr. 11	95848777	95848887	mmu-mir-196a-1
MmC-196	110	Chr. 15	105070838	105070947	mmu-mir-196a-2
MsA-196	109	AF089743.1	3384	3492
Og1-196	109	AC148952.1	29644	29752
On-196	109	AF533976.1	31691	31799
Ph1-196	109	AC116608.1	92959	93067
Ph2-196	111	AC116664.1	86742	86852
Ph3-196	110	AC117539.6	139363	139472
Pm-196	113	AF464190.1	7441	7553
PsA-196	111	AC132195.4	6829	6939
Pt1-196	109	AACZ01044449.1	3857	3749
Pt2-196	111	AACZ01045598.1	14404	14514
Pt3-196	110	AACZ01304541.1	350	241
RnA-196	109	Chr. 4	80809018	80808910	rno-mir-196b
RnB-196	111	Chr. 10	85010304	85010414
RnC-196	110	Chr. 7	141815461	141815570	rno-mir-196a
Ss1-196	109	AC129963.2	39514	39622
Ss2-196	111	AC129965.3	56129	56239
Ss3-196	110	AC145073.2	121042	121151
TnAa-196	109	FS_CONTIG_2737_1	573	681
TnAb-196	109	FS_CONTIG_1169_2	10381	10489
TnCa-196	111	FS_CONTIG_20444_1	1773	1663
XtA-196	110	scaffold_20070	10446	10337
XtB-196	110	scaffold_11960	5644	5753