Einen guten Ueberblick ueber snoRNAs findt ihr in dieser Publikation: ###snoRNA review Terns und Terns Fuer die Methoden, die wir verwenden werden eigenen sich die folgenden Paper: preprint pipeline Aus den folgenden Veroeffentlichungen werden wir die snoRNA Sequenzen als Ausgangsbasis fuer die Homologiesuche in anderen Arten verwenden. Ihr braucht die paper also nicht detailliert lesen, sondern verwendet haupsaechlich die darin bereitgestellten Sequenzen. ###C.elegans and nematodes Fuer Nematoden, insbesondere C.elegans findet ihr im Supplement von Computational prediction of Caenorhabditis box H/ACA snoRNAs using genomic properties of their host genes. Wang PP, Ruvinsky I.[RNA,2010] eine Tabelle, die alle bereits bekannten snoRNA Sequenzen beinhaltet. Das schoene ist, dass sie gleichzeitig ein mapping der verschieden verwendeten Namen darstellt. Die dort erwaehnten Paper sind: #database www.wormbase.org WormBase 2012: more genomes, more data, new website. Yook K, Harris TW, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, de la Cruz N, Duong A, Fang R, Ganesan U, Grove C, Howe K, Kadam S, Kishore R, Lee R, Li Y, Muller HM, Nakamura C, Nash B, Ozersky P, Paulini M, Raciti D, Rangarajan A, Schindelman G, Shi X, Schwarz EM, Ann Tuli M, Van Auken K, Wang D, Wang X, Williams G, Hodgkin J, Berriman M, Durbin R, Kersey P, Spieth J, Stein L, Sternberg PW.[Nucleic Acids Res., 2012] #publications with datasets 1)Computational prediction of Caenorhabditis box H/ACA snoRNAs using genomic properties of their host genes. Wang PP, Ruvinsky I.[RNA,2010] 2)A combined computational and experimental analysis of two families of snoRNA genes from Caenorhabditis elegans, revealing the expression and evolution pattern of snoRNAs in nematodes.Huang ZP, Chen CJ, Zhou H, Li BB, Qu LH. [Genomics., 2007] 3)Evolution of small nucleolar RNAs in nematodes.Zemann A, op de Bekke A, Kiefmann M, Brosius J, Schmitz J.[Nucleic Acids Res., 2006] 4)Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.Deng W, Zhu X, Skogerbø G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R.[Genome Res., 2006] 5)Isolation of eight novel Caenorhabditis elegans small RNAs.Wachi M, Ogawa T, Yokoyama K, Hokii Y, Shimoyama M, Muto A, Ushida C.[Gene,2004] 6)Location of 2(')-O-methyl nucleotides in 26S rRNA and methylation guide snoRNAs in Caenorhabditis elegans.Higa S, Maeda N, Kenmochi N, Tanaka T.[Biochem Biophys Res Commun., 2002] #comparative 7)Family Size and Turnover Rates among Several Classes of Small Non–Protein-Coding RNA Genes in Caenorhabditis Nematodes.Paul Po-Shen Wang and Ilya Ruvinsky.[Genome Biol.Evol, 2012] #D.melanogaster #database http://flybase.org/ FlyBase 101--the basics of navigating FlyBase.McQuilton P, St Pierre SE, Thurmond J; FlyBase Consortium.[Nucleic Acids Res. 2012] #publications with datasets 1)Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs.Huang ZP, Zhou H, He HL, Chen CL, Liang D, Qu LH.[RNA, 2005] 2)Different expression strategy: multiple intronic gene clusters of box H/ACA snoRNA in Drosophila melanogaster.Huang ZP, Zhou H, Liang D, Qu LH.[J Mol Biol., 2004] 3)A computational search for box C/D snoRNA genes in the Drosophila melanogaster genome.Accardo MC, Giordano E, Riccardo S, Digilio FA, Iazzetti G, Calogero RA, Furia M.[Bioinformatics. 2004] 4)Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data.Jung CH, Hansen MA, Makunin IV, Korbie DJ, Mattick JS.[BMC Genomics. 2010] 5)RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs.Yuan G, Klämbt C, Bachellerie JP, Brosius J, Hüttenhofer A.[Nucleic Acids Res., 2003] #Schistosoma Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum.Copeland CS, Marz M, Rose D, Hertel J, Brindley PJ, Santana CB, Kehr S, Attolini CS, Stadler PF.[BMC Genomics. 2009] #Bombix mori Experimental RNomics and genomic comparative analysis reveal a large group of species-specific small non-message RNAs in the silkworm Bombyx mori.Li D, Wang Y, Zhang K, Jiao Z, Zhu X, Skogerboe G, Guo X, Chinnusamy V, Bi L, Huang Y, Dong S, Chen R, Kan Y.[Nucleic Acids Res. 2011] #other RFAM NCBI