BLASTP 2.2.27+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: Heliconius_melpomene.Hmel1.24_edited.pep.all.fa 12,829 sequences; 5,811,795 total letters Query= EHJ69324 pep:known supercontig:DanPle_1.0:JH386160:331454:341674:-1 gene:KGM_10878 transcript:EHJ69324 description:"Clock " Length=600 Score E Sequences producing significant alignments: (Bits) Value HMEL008784-PA pep:novel scaffold:Hmel1:HE670830:164212:180796:1... 553 0.0 HMEL008134-PA pep:novel scaffold:Hmel1:HE671949:377658:392845:1... 108 4e-25 HMEL011026-PA pep:novel scaffold:Hmel1:HE672037:289113:306924:1... 99.4 5e-22 HMEL011931-PA pep:novel scaffold:Hmel1:HE671241:618510:620069:1... 92.0 9e-20 HMEL013329-PA pep:novel scaffold:Hmel1:HE671341:437613:470042:-... 68.6 3e-12 HMEL003979-PA pep:novel scaffold:Hmel1:HE669376:97701:120625:-1... 64.7 5e-11 HMEL009818-PA pep:novel scaffold:Hmel1:HE670953:187455:210433:-... 61.2 4e-10 HMEL003704-PA pep:novel scaffold:Hmel1:HE669264:4843:14373:1 ge... 59.7 1e-09 HMEL007609-PA pep:novel scaffold:Hmel1:HE670607:3283:14075:-1 g... 50.4 9e-07 HMEL003969-PA pep:novel scaffold:Hmel1:HE669371:87131:95395:1 g... 37.0 0.017 HMEL016898-PA pep:novel scaffold:Hmel1:HE672077:718316:730315:-... 36.2 0.025 HMEL017549-PA pep:novel scaffold:Hmel1:HE671628:50336:56893:1 g... 33.9 0.059 HMEL011919-PA pep:novel scaffold:Hmel1:HE671241:483053:493475:-... 34.7 0.061 HMEL003084-PA pep:novel scaffold:Hmel1:HE668657:37161:44976:1 g... 34.3 0.093 HMEL002212-PA pep:novel scaffold:Hmel1:HE667866:8562:51608:-1 g... 32.7 0.40 HMEL002810-PA pep:novel scaffold:Hmel1:HE668322:275825:280767:1... 30.8 0.83 HMEL014041-PA pep:novel scaffold:Hmel1:HE671417:253657:259507:1... 31.2 0.96 HMEL013526-PA pep:novel scaffold:Hmel1:HE671365:552916:562105:1... 30.0 1.9 HMEL011643-PA pep:novel scaffold:Hmel1:HE672030:256920:295300:1... 30.0 2.5 HMEL005547-PA pep:novel scaffold:Hmel1:HE670112:92248:92816:1 g... 27.3 2.7 HMEL010546-PA pep:novel scaffold:Hmel1:HE671092:80036:83838:1 g... 27.7 4.2 HMEL006056-PA pep:novel scaffold:Hmel1:HE670355:150077:180328:1... 28.5 5.1 HMEL006442-PA pep:novel scaffold:Hmel1:HE670424:25294:31679:1 g... 28.5 5.3 HMEL008426-PA pep:novel scaffold:Hmel1:HE671958:83780:85900:-1 ... 27.7 10.0 > HMEL008784-PA pep:novel scaffold:Hmel1:HE670830:164212:180796:1 gene:HMEL008784 transcript:HMEL008784-RA Length=513 Score = 553 bits (1424), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/617 (55%), Positives = 385/617 (62%), Gaps = 180/617 (29%) Query 11 TKRRTRNLSEKKRRDQFNMLVNELGSMVSTNNRKMDKSTVLKSTISFLKNHNEITVRSRA 70 +KRRTRNLSEKKRRDQFNML+NELGSMVS+NNRKMDKSTVLKSTISFLKNHNEITVRSRA Sbjct 11 SKRRTRNLSEKKRRDQFNMLLNELGSMVSSNNRKMDKSTVLKSTISFLKNHNEITVRSRA 70 Query 71 HDVQEDWKPAFLSNEEFTYLVLEALEGFVMVFSASGCIYYVSESVTSLLGHTPGDIINKS 130 HDVQEDWKP FLSNEEFTYLVLEALEGFVMVFSA+G N+ Sbjct 71 HDVQEDWKPTFLSNEEFTYLVLEALEGFVMVFSATGQ--------------------NEV 110 Query 131 IFDLAFVDDRPNLYNILQNGGTLDPTQVVTTDNPISFRCRLQRGTLDFRDEVTYELVQFD 190 F GTLD FRD++TYELVQF+ Sbjct 111 QFQCHL------------QRGTLD-----------------------FRDDITYELVQFN 135 Query 191 GHFRKNLESNENGHHSYQDEHESRLLFVCTGRLYMPQLVRDVSLVDTIRSEFTSRHSLEW 250 GHFR N+E NEN SYQ + +S SLEW Sbjct 136 GHFRTNMEQNENNDLSYQSDQDS---------------------------------SLEW 162 Query 251 KFLFLDHRAPPIIGYLPFEVLGTSGYDYYHFDDLEKVVSCHEALMQKGELTSCYYRFLTK 310 KFLFLDHRAPPIIGYLPFEVLGTSGYDYYHFDDLEKVV+CHEALMQKGELTSCYY Sbjct 163 KFLFLDHRAPPIIGYLPFEVLGTSGYDYYHFDDLEKVVTCHEALMQKGELTSCYY----- 217 Query 311 GQQWIWLQTRFYITYHQWNSKPEFVVCTHRVVSYADIIKSTKQERTETEESVRDCDHNGS 370 SYADI KSTKQE ET ++V + + + Sbjct 218 --------------------------------SYADIDKSTKQESGET-DAVSESEQTRN 244 Query 371 SLKDPSTEDAMVPVSPSYMSEASDAFATSYNSMSKLASVKSAATS-GSTSATVATLGTAI 429 LK+ S+EDAM P SVKSAATS GST ATVA++GT+ Sbjct 245 VLKESSSEDAMPP------------------------SVKSAATSAGSTGATVASVGTS- 279 Query 430 TTASATWPPRSSYLLYTTGSDTTSVSGGSRSSQRNS-------SQEL--QRLPEPALVPQ 480 TTA A+W PR+S++ Y GSDT SVSG SRSSQRN Q+L R+PEP+LVPQ Sbjct 280 TTAPASW-PRTSHVRY-AGSDTASVSGESRSSQRNRLSPHTGVPQQLMTHRVPEPSLVPQ 337 Query 481 HGIGAQYLEPAPYVGAVGVPAVLPLSLPPIPVIVAQDQAQL------QLQRTHRELQQMI 534 HGIGAQYLEPAPYVGAVGVP VLPLSLPP+PVIV+ DQAQL QLQRTHRELQQMI Sbjct 338 HGIGAQYLEPAPYVGAVGVPGVLPLSLPPLPVIVSPDQAQLQWPWQEQLQRTHRELQQMI 397 Query 535 VRQQEELRQVKEQLLFARLGILQPVINVQDPFTNPEQMPNR----SSIMYDGN-RQLSY- 588 VRQQEELRQVKEQLL ARLGILQP+INVQDP+ +PE++ + I+Y+G R + Y Sbjct 398 VRQQEELRQVKEQLLLARLGILQPIINVQDPYAHPEEIQQNQRLPAQILYEGGPRPIGYP 457 Query 589 -----PQTSHQQNHNMP 600 P + Q+H+MP Sbjct 458 PHTQAPPGNQNQHHHMP 474 > HMEL008134-PA pep:novel scaffold:Hmel1:HE671949:377658:392845:1 gene:HMEL008134 transcript:HMEL008134-RA Length=546 Score = 108 bits (270), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 162/361 (45%), Gaps = 50/361 (14%) Query 12 KRRTRNLSEKKRRDQFNMLVNELGSMV---STNNRKMDKSTVLKSTISFLKNHNEITVRS 68 K +++N + + RR++ N EL ++ S ++DK++V++ T S+LK +R Sbjct 27 KEKSKN-AARSRREKENAEFLELAKLLPLPSAITSQLDKASVIRLTTSYLK------MRQ 79 Query 69 RAHD-VQEDW-------KPAFLSNEEFTYLVLEALEGFVMVFSASGCIYYVSESVTSLLG 120 D + + W +P L+ E +L+ L+GF+ V + G I Y+SE+ + LG Sbjct 80 VFPDGLGDAWGAAPPPPQPRELTIRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLG 139 Query 121 HTPGDIINKSIFDLAFVDDRPNLYNILQ----------------NGGTLDPTQVVTTDNP 164 + ++ SI++ D + +L GGT P + + Sbjct 140 LSQVELTGNSIYEYIHQADHEEMNAVLGLQHPHSYLGPPSVGYPVGGTWGPNVDIECERT 199 Query 165 --ISFRCRLQRGTLDFRDEVTYELVQFDGHFRKNLESNENGHHSYQDEHESRLLFVCTGR 222 I +C L + Y+++ G+ R E + L V G Sbjct 200 FFIRMKCVLAKRNAGLTTS-GYKVIHCSGYLRARRFG----------EATAPLGLVAVGH 248 Query 223 LYMPQLVRDVSLVDTIRSEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHFD 282 P V ++ L + F R SL+ + +FLD R + GY P +++ + Y Y H Sbjct 249 SLPPSAVTELKLHSNM---FMFRASLDMRLIFLDARVASLTGYEPQDLIEKTLYHYIHGT 305 Query 283 DLEKVVSCHEALMQKGELTSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFVVCTHRVV 342 D+ + H L+ KG++TS YYRFLTK W+W+Q+ I ++ +S+P +V + V+ Sbjct 306 DVLHMRYSHCTLLNKGQVTSRYYRFLTKSGGWVWMQSYATIVHNSRSSRPHCIVSVNYVL 365 Query 343 S 343 S Sbjct 366 S 366 > HMEL011026-PA pep:novel scaffold:Hmel1:HE672037:289113:306924:1 gene:HMEL011026 transcript:HMEL011026-RA Length=624 Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 107/403 (27%), Positives = 178/403 (44%), Gaps = 65/403 (16%) Query 2 DDDGDDKDDTKR----RTRNLSE--KKRRDQFNMLVNELGS---MVSTNNRKMDKSTVLK 52 DDDG + + R + +N SE K+RRD+ N ++EL + M RK+DK TVL+ Sbjct 63 DDDGSEDARSSRTLPDKKQNHSEIEKRRRDKMNTYISELSAIVPMCGAMARKLDKLTVLR 122 Query 53 STISFLKNHNEITVRSRAHDVQEDWKPAFLSNEEFTYLVLEAL-EGFVMVFSAS-GCIYY 110 + L++ I A + +P+FLS E LVL+A + F+MV G + Y Sbjct 123 MAVQHLRS---IRGALSAGPLTARPRPSFLSERELNALVLQAARDCFLMVVGCDRGRLLY 179 Query 111 VSESVTSLLGHTPGDIINKSIFDLAFVDDRPNLYNILQ-----------NGGTLDP--TQ 157 VS SVT LL + +++ +S+FD+ D + L + T+ P T Sbjct 180 VSASVTKLLHYDQSELLGQSLFDILHPKDVAKVKEQLSSSDLSPRERLIDAKTMLPVKTD 239 Query 158 VVTTDNPI------SFRCRL--------------QRGTLDFRDE--------------VT 183 VVT + + SF CR+ Q+ T + ++E Sbjct 240 VVTGASRLCPGARRSFFCRIKCRLSADSANHNANQQPTNEVKEENEPNAKLRKKQANEKK 299 Query 184 YELVQFDGHFRKNLESNENGHHSYQDEHESRLL--FVCTGRLYMPQLVRDVSLVDTIRSE 241 Y +VQ G+ + ++ + + ++ + V GR + + V T + Sbjct 300 YCVVQCTGYLKSWAPADMSDTTDTSVDDDACNMSCLVAVGR-ALSDISPQTPAVYTRHLQ 358 Query 242 FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHFDDLEKVVSCHEALMQKGELT 301 + SRH+ + KFLF+D R +G+LP E+LGTS Y+Y +L V H+A + + Sbjct 359 YISRHATDGKFLFVDQRVTLALGFLPQELLGTSLYEYVSAPELGAVARTHKAALLRRAAL 418 Query 302 SC-YYRFLTKGQQWIWLQTRFYITYHQWNSKPEFVVCTHRVVS 343 Y F K ++ ++T F + W E +V + VV+ Sbjct 419 RTPPYCFRRKDGSYVRMETHFKPFRNPWTKDVECLVANNTVVT 461 > HMEL011931-PA pep:novel scaffold:Hmel1:HE671241:618510:620069:1 gene:HMEL011931 transcript:HMEL011931-RA Length=519 Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 164/353 (46%), Gaps = 35/353 (10%) Query 11 TKRRTRNLSEKKRRDQFNMLVNELGSMVST---NNRKMDKSTVLKSTISFLKNHNEITVR 67 + R++R ++EK RR QFN + ++ +++S + RK+DK++VL+ + L+N + Sbjct 64 SDRQSRIIAEKHRRSQFNSQIAQMMTLLSDIVHSQRKVDKTSVLRLAANKLRNEHVFGDS 123 Query 68 SRAHDVQEDWKPAFLSNEEFTYLVLEALEGFVMVFSASGCIYYVSESVTSLLGHTPGDII 127 + + E W A L + + GF+ + G I+ VS +V LG+ D++ Sbjct 124 IKCCHL-ETWSSAILK-------FFDLIGGFMFAITCKGRIFNVSPNVQEKLGYCHIDLL 175 Query 128 NKSIFDLAFVDD----RPNLYNI-LQNGGTLDPTQVVTTDNPISFRCRLQRGTLDFRDEV 182 + I++ +D R ++Y I LQ G +P D+ +F R+ R D Sbjct 176 GQDIYNYIHNEDKEILRQHIYPIELQTG--CNPKLF---DDLHNFHIRIMRSGAR-SDPP 229 Query 183 TYELVQFDGHFRKNLESNENGHHSYQDEHESRL----LFVCTGRLYM-PQLVRDVS---- 233 YE + +G R++ + NG Q R+ F +G Y+ +V +S Sbjct 230 RYERCRIEGVLRRSDRATSNGVQDEQTIRRQRVRHHRTFSSSGNDYVFIGIVHVLSNNLP 289 Query 234 ---LVDTIRSEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHFDDLEKVVSC 290 L T SE+ +RH ++ + + D GY+ EV GTS + + H +D+ V+ Sbjct 290 PRILPPTAYSEYWTRHLIDGRIVQCDQSISLAAGYMTDEVTGTSAFVFMHKEDVRWVICV 349 Query 291 HEALM-QKGELTSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFVVCTHRVV 342 + Q E +YR +++ +I+++TR ++ + K + VC + ++ Sbjct 350 LRQMYDQSREYGESFYRLMSRSGHFIYMRTRGFLEIDKDTKKVQSFVCINSII 402 > HMEL013329-PA pep:novel scaffold:Hmel1:HE671341:437613:470042:-1 gene:HMEL013329 transcript:HMEL013329-RA Length=1830 Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/144 (31%), Positives = 80/144 (56%), Gaps = 11/144 (8%) Query 2 DDDGDDKDDTKRRTRNLS-EKKRRDQFNMLVNELGSMVSTNN---RKMDKSTVLKSTISF 57 +D+ DK+ R + E++RR++ + EL MV T + RK DK T+L+ ++ Sbjct 31 EDNIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAH 90 Query 58 LKNHNEITVRSRAHDVQED-WKPAFLSNEEFTYLVLEALEGFVMVFSA-SGCIYYVSESV 115 +K +R + + +KP+FL+++E +L+LEA +GF+ V S +G I YVS+S+ Sbjct 91 MK-----ALRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVSCDTGRIIYVSDSI 145 Query 116 TSLLGHTPGDIINKSIFDLAFVDD 139 +L ++ G+ + +D DD Sbjct 146 APVLNYSQGEWYSSCFYDQVHPDD 169 Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (63%), Gaps = 0/51 (0%) Query 293 ALMQKGELTSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFVVCTHRVVS 343 L KG++ S YRF TK ++W+WL+T + + +N E++VCT+ + + Sbjct 239 VLKLKGQIISLMYRFRTKNREWVWLRTSAFAFLNPYNDDVEYIVCTNTLAN 289 > HMEL003979-PA pep:novel scaffold:Hmel1:HE669376:97701:120625:-1 gene:HMEL003979 transcript:HMEL003979-RA Length=1194 Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 30/264 (11%) Query 96 EGFVMVFSAS-GCIYYVSESVTSLLGHTPGDI-INKSIFDLAFVDDRPNLYNILQNG--- 150 +GF V S G + Y + S+T+ LG P D+ + +S D DR + + G Sbjct 180 DGFSCVISMQDGVVMYTASSITTALGF-PKDMWVGRSFIDFVHPRDRSTFASQITRGLAV 238 Query 151 -----GTLDPTQVVTTDNPISFRCRLQR-----GTLDFRDE-VTYELVQFDGHFRKNLES 199 GT V ++ S CR++R +D VT+ +F KN+ + Sbjct 239 PKNVNGTQAKAAPVLGNHVCSMVCRIRRYRGLSSGFGVKDRMVTFMPFMLKFYF-KNI-N 296 Query 200 NENGHHSYQDEHESRLLFVCTGRLYMPQLVRDVSLVDTIRSEFTSRHSLEWKFLFLDHRA 259 +E GH Y L + + + ++ + + F RHS ++D + Sbjct 297 DEEGHVIY--------LVIQATPFFSAFKSPNEAISNAV--PFIIRHSSSGSLEYIDPES 346 Query 260 PPIIGYLPFEVLGTSGYDYYHFDDLEKVVSCHEALMQKGELT-SCYYRFLTKGQQWIWLQ 318 P +GYLP +++ YH DL + +E ++++G ++ S YR + + ++ L+ Sbjct 347 VPYLGYLPQDIVEKDALQLYHPADLVYLRQVYETIVKEGVVSRSKPYRMMAQNGHYLKLE 406 Query 319 TRFYITYHQWNSKPEFVVCTHRVV 342 T + + W+ K EFV+ H + Sbjct 407 TEWSSFINPWSKKLEFVIGKHFIT 430 > HMEL009818-PA pep:novel scaffold:Hmel1:HE670953:187455:210433:-1 gene:HMEL009818 transcript:HMEL009818-RA Length=453 Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 70/310 (23%), Positives = 127/310 (41%), Gaps = 71/310 (23%) Query 38 VSTNNRKMDKSTVLKSTISFLKNHNEITVRSRAHDVQEDWKPAFLSNEEFTYLVLEALEG 97 ++ RK+DK +VL+ +L++H + S D P F + +FT +L L+G Sbjct 15 IAKLGRKLDKISVLRLAAHYLRSHQHVFGSS------IDRGPEF--SLKFTETLLNNLKG 66 Query 98 FVMVFSASGCIYYVSESVTSLLGHTPGDIINKSIFDLAFVDD----RPNLY--------- 144 F++ + G + +S +V LG+T +++ +++F++ +D R LY Sbjct 67 FLITTTYKGIVVVISPNVQEYLGYTELELVGQNVFNIIHKEDHQLLRHRLYPRSCTLTKR 126 Query 145 ---NILQNGGTLDPTQVVTTDNPISFRCRLQRGTLDFRDEVTYELVQFDGHFRKNLESNE 201 +I + G++ SF R ++ + Y +G RK + Sbjct 127 GELSIPKETGSVGKIAAALASERRSFVIRFRKLNQQKSEPPQYISCHVEGSLRKADRAGS 186 Query 202 NGHHSYQDEHESRLLFVCTGRLYMPQLVRDVSLVDTIRSEFTSRHSLEWKFLFLDHRAPP 261 G + V TGR R E+ +RHS++ + + + R Sbjct 187 RGERA-----------VRTGR--------------RARMEYRTRHSIDGEIIQCEQRIAL 221 Query 262 IIGYLPFEVLGTSGYDYYHFDDLEKVVSCHEALMQKGELTSCYYRFLTKGQQWIWLQTRF 321 + GY+ EV +V H + GE SC YR +TK Q+I+++T Sbjct 222 VTGYMTHEV---------------RVYEKHRLV---GE--SC-YRLMTKNGQFIYMRTLG 260 Query 322 YITYHQWNSK 331 ++ Q NSK Sbjct 261 WLDVDQ-NSK 269 > HMEL003704-PA pep:novel scaffold:Hmel1:HE669264:4843:14373:1 gene:HMEL003704 transcript:HMEL003704-RA Length=588 Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/133 (28%), Positives = 68/133 (51%), Gaps = 5/133 (4%) Query 235 VDTIRSE---FTSRHSLEWKFLFLD-HRAPPIIGYLPFEVLGTSGYDYYHFDDLEKVVSC 290 V IR E F +R + +++ + R ++GY E+ G + Y H +D K+ C Sbjct 77 VHEIRLESDMFVTRINFDFRIAHCEPSRVSELLGYTSEELTGKNLYALCHGEDANKLRKC 136 Query 291 HEALMQKGELTSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFVVCTHRVVSYADIIKS 350 H LM KG++ + YYR + K + W+QT + N++ + ++C + V+S + + Sbjct 137 HVDLMNKGQVLTHYYRVMNKLGGYTWMQTCATVVCSSKNAEEQNIICVNYVISGRE-YPN 195 Query 351 TKQERTETEESVR 363 T + + EESV+ Sbjct 196 TVMDCCQLEESVQ 208 > HMEL007609-PA pep:novel scaffold:Hmel1:HE670607:3283:14075:-1 gene:HMEL007609 transcript:HMEL007609-RA Length=415 Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/208 (21%), Positives = 81/208 (39%), Gaps = 38/208 (18%) Query 100 MVFSASGCIYYVSESVTSLLGHTPGDIINKSIFDLAFVDDR--------------PNLYN 145 M+ + G +++ + S+ S LG ++ +++L +DR P++ N Sbjct 1 MILTCEGEVFFATHSIESYLG------FHQVMYELVHSEDREELQRQLLWNSFLPPDVNN 54 Query 146 I-LQNGGTLDPTQVVTTDNPISFRCRLQRGTLDFRDEVTYELVQFDGHFRKNLESNENGH 204 + LQ+ + ++ + FRC L + R ++ + G +K Sbjct 55 LTLQDVLRSERAHLLERSFTVRFRCLLDNTSGFLRLDIRGRIKVLHGQNKKT-------- 106 Query 205 HSYQDEHESRLLFVCTGRLYMPQLVRDVSLVDTIRSEFTSRHSLEWKFLFLDHRAPPIIG 264 E LF P L+ + F S+H L+ + +D R ++G Sbjct 107 -----EEPPLALFAICAPFGPPSLLE----IPQKEVMFKSKHKLDLSLVSMDQRGKMLLG 157 Query 265 YLPFEVLGTSGYDYYHFDDLEKVVSCHE 292 Y E+ GYD H+DDL V S H+ Sbjct 158 YTDAELANMGGYDLVHYDDLAYVASAHQ 185 > HMEL003969-PA pep:novel scaffold:Hmel1:HE669371:87131:95395:1 gene:HMEL003969 transcript:HMEL003969-RA Length=462 Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/156 (22%), Positives = 72/156 (46%), Gaps = 12/156 (8%) Query 192 HF--RKNLESNENGHHSYQDEHESRLLFVCTGRLYMPQLVRDVSLVDTIRSEFTSRHSLE 249 HF R N+ N + D+ + CT L MP+ R+ +V + FT+ H+++ Sbjct 148 HFFCRMNVSRNARRQMRFGDQK----VTTCTP-LAMPE-TREC-VVHGATNVFTTIHAMD 200 Query 250 WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHFDDLEKVVSCHEALMQKGELTSCYY--RF 307 K L +D +G+ +++ S Y H++ L + + H+ + Q + C + Sbjct 201 MKILHIDANGEWYLGWKKTDLVDISWYQILHWESLREAQTKHKLITQSDQEKCCILLAKL 260 Query 308 LTKGQQWIWLQTRFYITYHQWNSKPEFVVCTHRVVS 343 + Q++W+ + ++ +F+V T++V+S Sbjct 261 QQRSGQFLWVHIVLQVK-DAADTPRQFIVATNQVLS 295 > HMEL016898-PA pep:novel scaffold:Hmel1:HE672077:718316:730315:-1 gene:HMEL016898 transcript:HMEL016898-RA Length=325 Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 58/119 (49%), Gaps = 17/119 (14%) Query 276 YDYYHFDDLEKVVSCHEALMQKGELTSCYYRFLTK--GQQWIWLQTRFYITYHQWNSKPE 333 +D Y DL V + H M K L S + +++ QQ W +T+ + YHQ+ PE Sbjct 49 HDAYGKKDL--VAAHHRITMLKLALKSSGWIKISEWESQQSGWTRTKLSLQYHQYEKSPE 106 Query 334 FVVCT--HRVVSYADIIKSTKQERTETEESVRDCDHNGSSLKDPSTEDAMVP---VSPS 387 ++ T H S+ +I+ S + + + +E++ ++K P + ++P +SP+ Sbjct 107 DIIMTSPHEETSFKNILISIRDKPSIIDETI--------TVKRPKKTNFLMPSNTISPT 157 > HMEL017549-PA pep:novel scaffold:Hmel1:HE671628:50336:56893:1 gene:HMEL017549 transcript:HMEL017549-RA Length=172 Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust. Identities = 35/165 (21%), Positives = 69/165 (42%), Gaps = 13/165 (8%) Query 125 DIINKSIFDLAFVDDRPNLYNILQNGGTLDPTQVVTTDNPISFRCRL-QRGTLDFRDEVT 183 +I+ +S+F+ + D + L+ P + D + +C L +G + Sbjct 2 EIMGQSVFEFSHPCDHDEIREALR------PGKNGKRDLLLRIKCTLTSKGRNVHLKSAS 55 Query 184 YELVQFDGHFRKNLESNENGHHSYQDEHESRLLFVCTGRLYMPQLVRDVSLVDTIR---- 239 Y+++ GH N E + + + E E++ V + + + R + I Sbjct 56 YKVIHVTGHML-NCEETKEQERNVESEDENKEGGVKFTKGALVAVGRPIPHPSNIEIPLS 114 Query 240 -SEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHFDD 283 F ++H+L+ KF + D +GY ++ G S YDY+H D Sbjct 115 SMTFLTKHNLDMKFTYSDECLLNTLGYDSEDLAGRSLYDYHHAAD 159 > HMEL011919-PA pep:novel scaffold:Hmel1:HE671241:483053:493475:-1 gene:HMEL011919 transcript:HMEL011919-RA Length=250 Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (54%), Gaps = 7/67 (10%) Query 1 MDDDGDDKDDTKRRTRNLSEKKRRDQFNMLVNELGSMV-------STNNRKMDKSTVLKS 53 M+ + K D +R + + EK+RR + N +NEL +++ + K++K+ +L+ Sbjct 16 MNAEVQKKGDNRRSNKPIMEKRRRARINNCLNELKALILDAMKKDPARHSKLEKADILEM 75 Query 54 TISFLKN 60 T+ L+ Sbjct 76 TVKHLEG 82 > HMEL003084-PA pep:novel scaffold:Hmel1:HE668657:37161:44976:1 gene:HMEL003084 transcript:HMEL003084-RA Length=284 Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust. Identities = 20/77 (26%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query 3 DDGDDKDDTKRRTRNLSEKKRRDQFNMLVNELGSMVST-----NNRKMDKSTVLKSTISF 57 +D +++ + + + EKKRRD+ N + EL +V + K++K+ +L+ T+ Sbjct 44 EDDAFSEESSKDAQGVIEKKRRDRINTSLTELKRLVPAACEKQGSAKLEKAEILQLTVDH 103 Query 58 LKNHNEITVRSRAHDVQ 74 LK + + + A+D Q Sbjct 104 LKMLHTKGLDTYAYDPQ 120 > HMEL002212-PA pep:novel scaffold:Hmel1:HE667866:8562:51608:-1 gene:HMEL002212 transcript:HMEL002212-RA Length=3303 Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 41/94 (44%), Gaps = 13/94 (14%) Query 307 FLTKGQQWIW---LQTRFYITYHQWNSKPEFVVCTHRVV-------SYAD---IIKSTKQ 353 ++ + WIW L ++F+IT H W + E + T ++ ++ D ++ TK Sbjct 1322 YIGREMAWIWILWLVSQFWITLHAWFPRCERLAATDKLFAKPWYNGAFVDQFLLVNRTKD 1381 Query 354 ERTETEESVRDCDHNGSSLKDPSTEDAMVPVSPS 387 E E + N + + S+E + V PS Sbjct 1382 EEIEIQFDELKDHKNSDQISNASSEHIIKDVRPS 1415 Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust. Identities = 12/38 (32%), Positives = 21/38 (55%), Gaps = 3/38 (8%) Query 307 FLTKGQQWIWLQ---TRFYITYHQWNSKPEFVVCTHRV 341 F+++ WIWL ++ +IT H W K E + T ++ Sbjct 2310 FISRQMAWIWLLWLLSQTWITLHIWTPKAERLAATEKL 2347 > HMEL002810-PA pep:novel scaffold:Hmel1:HE668322:275825:280767:1 gene:HMEL002810 transcript:HMEL002810-RA Length=222 Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust. Identities = 12/31 (39%), Positives = 21/31 (68%), Gaps = 0/31 (0%) Query 8 KDDTKRRTRNLSEKKRRDQFNMLVNELGSMV 38 +DD +R T N E++RRD+ N + +L ++V Sbjct 107 RDDKRRATHNEVERRRRDKINSWITKLAALV 137 > HMEL014041-PA pep:novel scaffold:Hmel1:HE671417:253657:259507:1 gene:HMEL014041 transcript:HMEL014041-RA Length=812 Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust. Identities = 26/88 (30%), Positives = 39/88 (44%), Gaps = 8/88 (9%) Query 177 DFRDEVTYELVQFDGHFRKNLESNENGHHSYQDEHESRLLFVCTGRLYMPQLVRDVSLVD 236 D +D Y L FD F+ + +G +S D E F+C QLV +S Sbjct 258 DNQDRWDYYLPYFDSVFKLINNNESDGDNSADDTAEKCHEFIC-------QLVESMSSGR 310 Query 237 TIRSEFTSRHSLEWKFLFLDHRAPPIIG 264 T+R + +R L WK L +D ++G Sbjct 311 TLRGPYLARLEL-WKRLSVDGDPTSLLG 337 > HMEL013526-PA pep:novel scaffold:Hmel1:HE671365:552916:562105:1 gene:HMEL013526 transcript:HMEL013526-RA Length=468 Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 35/78 (45%), Gaps = 2/78 (3%) Query 140 RPNLYNILQNGGTLDPTQVVTTDNPISFRCRLQRGTLDFRDEVTY-ELVQFDGHFRKNLE 198 RP Y I G P VV P + R + Q+G R ++ + EL+ +G +N+ Sbjct 308 RPCSYTIAPGGPPHAPECVVLRSYPNAVRVQCQKGWDGGRSQIVHLELLNTEGTVLQNI- 366 Query 199 SNENGHHSYQDEHESRLL 216 SN GH D + + L Sbjct 367 SNAAGHFHLPDIEDDKNL 384 > HMEL011643-PA pep:novel scaffold:Hmel1:HE672030:256920:295300:1 gene:HMEL011643 transcript:HMEL011643-RA Length=940 Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (54%), Gaps = 1/54 (2%) Query 97 GFV-MVFSASGCIYYVSESVTSLLGHTPGDIINKSIFDLAFVDDRPNLYNILQN 149 GF+ M ++ G I V+E++ L+ ++ KSIF L DD + +L+N Sbjct 192 GFILMEINSKGEIECVTENIKDLVLSERTELYKKSIFSLLHADDHAKIKPLLRN 245 > HMEL005547-PA pep:novel scaffold:Hmel1:HE670112:92248:92816:1 gene:HMEL005547 transcript:HMEL005547-RA Length=62 Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 23/36 (64%), Gaps = 0/36 (0%) Query 525 RTHRELQQMIVRQQEELRQVKEQLLFARLGILQPVI 560 + HR+L+ ++ +EELRQ K+Q L R L+ ++ Sbjct 4 QAHRDLRPEMMVIREELRQAKQQTLAVRRTALKKLL 39 > HMEL010546-PA pep:novel scaffold:Hmel1:HE671092:80036:83838:1 gene:HMEL010546 transcript:HMEL010546-RA Length=104 Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 23/36 (64%), Gaps = 0/36 (0%) Query 525 RTHRELQQMIVRQQEELRQVKEQLLFARLGILQPVI 560 + HR+L+ ++ +EELRQ K+Q L R L+ ++ Sbjct 46 QAHRDLRPEMMVIREELRQAKQQTLAVRRTALKKLL 81 > HMEL006056-PA pep:novel scaffold:Hmel1:HE670355:150077:180328:1 gene:HMEL006056 transcript:HMEL006056-RA Length=313 Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust. Identities = 30/127 (24%), Positives = 54/127 (43%), Gaps = 15/127 (12%) Query 20 EKKRRDQFNMLVNELGSMVSTNNR---------KMDKSTVLKSTISFLKN-HNEITVRSR 69 E++RR N + ELG+++ N + +K T+LKS++ ++K +E+ +R Sbjct 112 ERRRRFNINDRIKELGTLLPKTNDPFYEVIRDVRPNKGTILKSSVDYIKCLRDEV---NR 168 Query 70 AHDVQEDWKPAFLSNEEFTYLVLEALEGFVMVFSASGCIYYVSESVTSLLGHTPGDIINK 129 ++ K L N + L ++ LE C E SL P D+ + Sbjct 169 LKQSEQRRKQIELHNRKL-MLRIQELERLAHGLKLGSCSPLSREEGLSLSCLEP-DLCLE 226 Query 130 SIFDLAF 136 + D F Sbjct 227 PVTDHLF 233 > HMEL006442-PA pep:novel scaffold:Hmel1:HE670424:25294:31679:1 gene:HMEL006442 transcript:HMEL006442-RA Length=332 Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust. Identities = 23/64 (36%), Positives = 33/64 (52%), Gaps = 6/64 (9%) Query 396 FATSYNSMSKLASVKSAATSGSTSAT--VATLGTAITTA---SATWPPRSSYLLYTTGSD 450 SYN+M VKS +T+ +A VA L T +T+ S TW P Y+L GS Sbjct 122 LVASYNTMLVSEVVKSVSTACVAAALSYVAGLLTLVTSTLVISQTWLPTVQYIL-ARGSV 180 Query 451 TTSV 454 +T++ Sbjct 181 STAI 184 > HMEL008426-PA pep:novel scaffold:Hmel1:HE671958:83780:85900:-1 gene:HMEL008426 transcript:HMEL008426-RA Length=423 Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 7/59 (12%) Query 8 KDDTKRRTRNLSEKKRRDQFNMLVNELGSMV-------STNNRKMDKSTVLKSTISFLK 59 K + ++ + + EKKRR + N +NEL ++ + K++K+ +L+ T+ L+ Sbjct 30 KAELRKTNKPIMEKKRRARINNCLNELKDLLMDATDKDPARHSKLEKADILELTVKHLQ 88 Lambda K H a alpha 0.317 0.131 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2264447500 Database: Heliconius_melpomene.Hmel1.24_edited.pep.all.fa Posted date: Jan 15, 2015 11:02 AM Number of letters in database: 5,811,795 Number of sequences in database: 12,829 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40