T-COFFEE, Version_9.01 (2011-10-13 19:18:48 - Revision 1115 - Build 7)
Cedric Notredame
CPU TIME:4 sec.
SCORE=14
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BAD AVG GOOD
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Rattus : 17
Monodelphis : 16
Mus : 14
Oncorhynchus : 12
Gallus : 13
Oryctolagus : 15
Danio : 13
Bos : 15
Homo : 15
Sus : 16
Xenopus : 12
cons : 14
Rattus 1 CCGC-----------------AC------------- 6
Monodelphis 1 CCUC-------------------------------- 4
Mus 1 AGUU-----------------CCGGGGGAGCCGCGG 19
Oncorhynchus 1 GAAA-------------------------------- 4
Gallus 1 CGCU-------------------------------- 4
Oryctolagus 1 CUU--------------------------------- 3
Danio 1 CUUU-------------------------------- 4
Bos 1 UCC--------------------------------- 3
Homo 1 ACGUCACCGCCUGCGUCGCUUCCGGAGGCGCAGCGG 36
Sus 1 GGC--------------------------------- 3
Xenopus 1 CCCA-------------------------------- 4
cons 1 36
Rattus 7 ------------------------------------ 6
Monodelphis 5 ------------------------------C----- 5
Mus 20 ACGGUGACGUAGCCGAGCGUGCCCUCUAUAUGAGGU 55
Oncorhynchus 5 ------------------------------CUU--- 7
Gallus 5 ------------------------------CCC--- 7
Oryctolagus 4 -----------------------------UUUU--- 7
Danio 5 ------------------------------UCA--- 7
Bos 4 -----------------------------CCCC--- 7
Homo 37 GCGAUGACGUAGAGGGACGUGCCCUCUAUAUGAGGU 72
Sus 4 -----------------------------ACGA--- 7
Xenopus 5 ------------------------------CGC--- 7
cons 37 72
Rattus 7 ------------------------------------ 6
Monodelphis 6 ------------------------------------ 5
Mus 56 UGGGGAGCGCCCGCGUCGGCCUUUUCCGCCCGCUCC 91
Oncorhynchus 8 ---------------------------U-------- 8
Gallus 8 ---------------------------GCCCG---- 12
Oryctolagus 8 ------------------------UCCGCCCGCUCC 19
Danio 8 ---------------------------GCUG----- 11
Bos 8 ------------------------------------ 7
Homo 73 UGGGGAGCGGCUGAGUCGGCCUUUUCCGCCCGCUCC 108
Sus 8 ------------------------------------ 7
Xenopus 8 ---------------------------G-------- 8
cons 73 108
Rattus 7 --------------------------CGCUCCGCGU 16
Monodelphis 6 -----CCCCCCAAGC--G-------CCGCUCCGGCU 27
Mus 92 CCCCUCCCCCCGCGC--G-------CCGCUCCGGCU 118
Oncorhynchus 9 ------UCUG--GUCAAGCCAGUGAGGG-UGAGGGU 35
Gallus 13 --------------------------CUCUCGGGUC 22
Oryctolagus 20 CCCCUACCCCCGAGG--G-------CCGCUCCGGCU 46
Danio 12 ----AGUCCACGAUC---------AGGUCACAGCCA 34
Bos 8 ----UCCCCCCGAGC--G-------CCGCUCUGGCC 30
Homo 109 CCCCUCCCCCCGAGC--G-------CCGCUCCGGCU 135
Sus 8 -----GCCCCCGAGC--G-------CCGCUCCGGCU 29
Xenopus 9 ------UCCGCGGAC--G-C-GUGGGGC-UGUGU-- 31
cons 109 * 144
Rattus 17 GCACCGCACUCGCUCCGA-------------CUGUC 39
Monodelphis 28 GCAUCGCGCUCACACCGAGC-UCCGGGCCC-CCGCA 61
Mus 119 GCACCGCGCUCGCUUCCG-C---------G-CUGUC 143
Oncorhynchus 36 ACUCCGUUGU-----------CUUU------G---- 50
Gallus 23 GC--UGCG------CAGAGA-GCCGCGCCG-CCGCU 48
Oryctolagus 47 GCACCGCGCUCGCUCUGAGC-UCCGGGCUC-CUGCC 80
Danio 35 GCGCUGUUCG-----------CCUU------C---- 49
Bos 31 GCACUGCGCUCGCCCUGAGC-UCCGGGCUC-CUGCU 64
Homo 136 GCACCGCGCUCGCUCCGAGU-UUCAGGCUC-GUGCU 169
Sus 30 GCACCGCGCUCGCUCUGAGCUCCCGG--UUCCUGCU 63
Xenopus 32 GCUUCG---G-----------CAUU----------- 42
cons 145 * * 180
Rattus 40 AGGCUAGCGCC---ACU---GUC--CC----CAGCC 63
Monodelphis 62 GCGCUAGCGCC---GCCGCCGCCGCUCCCUCCUUCC 94
Mus 144 AGGCUAGCGCC---GCC---GUC--CC----CAGCC 167
Oncorhynchus 51 -------UGUC---GAAUUCG-A--AACUUCAAUCC 73
Gallus 49 -------CCCC---GCC---GCC--C----CGCGCC 65
Oryctolagus 81 AAGCUAGCGCCGCCGCUGUCGUC--UCCUACCAGCC 114
Danio 50 -------U------GAUAUCCCC--AGACACAAUCC 70
Bos 65 AAGCCAGCGCC---GCUGUCGCC--UCCCUCCAGUC 95
Homo 170 AAGCUAGCGCC---GUCGUCGUC--UCCCUUCAGUC 200
Sus 64 AAGCUAGCGCC---GCCGUCGUC--UCCCUCCAGCC 94
Xenopus 43 --------------A----C--A--ACACUUAGGCC 56
cons 181 * 216
Rattus 64 GUCACCAUGAUCAUCUACCGGGACCUCAUCAGCCAU 99
Monodelphis 95 GCCGCCAUGAUUAUCUACCGGGACCUCAUCAGCCAU 130
Mus 168 GUCACCAUGAUCAUCUACCGGGACCUCAUCAGCCAU 203
Oncorhynchus 74 GAC--AAUGAUCAUCUACAAGGACAUCAUCACUGGG 107
Gallus 66 GCCGCCAUGAUCAUCUACCGGGACUGCAUCAGCCAG 101
Oryctolagus 115 GCCAUCAUGAUUAUCUACCGGGACCUCAUCAGCCAC 150
Danio 71 AACAAAAUGAUCAUCUACAAGGACAUCAUCACUGGG 106
Bos 96 GCCAUCAUGAUCAUCUACCGGGACCUCAUUAGCCAU 131
Homo 201 GCCAUCAUGAUUAUCUACCGGGACCUCAUCAGCCAC 236
Sus 95 GCCAUCAUGAUCAUCUACCGGGACCUCAUCAGCCAU 130
Xenopus 57 GCCAACAUGAUCAUCUACAAGGACUGCAUCACUGAA 92
cons 217 * ***** ****** **** *** * 252
Rattus 100 GACGAGCUGUUCUC---CGACAUCUACAAGAUCCGG 132
Monodelphis 131 GAUGAGAUGUUCUCCGACA---UUUACAAGAUCCGG 163
Mus 204 GACGAGCUGUUCUC---CGACAUCUACAAGAUCCGG 236
Oncorhynchus 108 GAUGAAAUGUUCUCUGACA---UUUACAAGAUCAAA 140
Gallus 102 GACGAGAUGUUCUCGGACA---UCUACAAGAUCCGC 134
Oryctolagus 151 GAUGAGAUGUUCUCCGACA---UCUACAAGAUCCGG 183
Danio 107 GAUGAGAUGUUCUCAGACA---UCUACAAAAUCAAA 139
Bos 132 GACGAGAUGUUCUCCGACA---UCUACAAGAUCCGG 164
Homo 237 GAUGAGAUGUUCUCCGACA---UCUACAAGAUCCGG 269
Sus 131 GAUGAGAUGUUUUCCGACA---UCUACAAGAUCCGG 163
Xenopus 93 GACGAAAUGUUCUCGGAUA---UCUACAAAAUCAUC 125
cons 253 ** ** **** ** * ***** *** 288
Rattus 133 GAGAUCGCGGACGGGCUGUGCCUGGAGGU--GGAGG 166
Monodelphis 164 GAGAUCGCGAACGGGCUGUGCCUGGAGGU--GGAGG 197
Mus 237 GAGAUCGCGGACGGGCUGUGCCUGGAGGU--GGAGG 270
Oncorhynchus 141 GAAUCAACAAAUGGGAUGUUAUUGGAAGU--UGAGG 174
Gallus 135 GAGGUGGCGAACGGCCUGUGCCUGGAAGUGGAGGGG 170
Oryctolagus 184 GAGAUCGCGGGCGGACUGUGCCUGGAGGU--GGAGG 217
Danio 140 GAGUCUGAGAAUGGAAUGAUGCUCGAAGU--GGAGG 173
Bos 165 GAGGUCGCGGACGGGCUGUGUCUGGAGGU--GGAGG 198
Homo 270 GAGAUCGCGGACGGGUUGUGCCUGGAGGU--GGAGG 303
Sus 164 GAGAUCGCGGACGGGCUGUGUCUGGAGGU--GGAGG 197
Xenopus 126 GAAACCCCCGAUGGGAUGUGUUUGGAAGU--UGAAG 159
cons 289 ** ** ** * ** ** * * 324
Rattus 167 GCAAGAUGGUCAGUAGAACAGAGGGUGCCAUCGAUG 202
Monodelphis 198 GGAAGAUGGUCAGUAGGACAGAGGGUACCAUUGAUG 233
Mus 271 GCAAGAUGGUCAGUAGAACAGAGGGUGCCAUCGAUG 306
Oncorhynchus 175 GAAAGAUGGUUAGUAGAACGGAGA---AUAUCGAUG 207
Gallus 171 --AAGAUGGUCACCAGGACAGAGGGUCAAAUUGAUG 204
Oryctolagus 218 GGAAGAUGGUCAGUAGGACAGAGGGUAACAUUGAUG 253
Danio 174 GAAAGAUGAUCACCAGAGCAGAAGGAGACAUUGAUG 209
Bos 199 GGAAGAUGGUCAGUAGGACAGAGGGUAACAUCGAUG 234
Homo 304 GGAAGAUGGUCAGUAGGACAGAAGGUAACAUUGAUG 339
Sus 198 GGAAGG----------GACAGAGGGUAACAUUGAUG 223
Xenopus 160 GCAAGGUAAUCCAAAGAGAAGAAGGUGCAAUUGAUG 195
cons 325 *** ** ** **** 360
Rattus 203 AUUCACUCAUUGGUGGAAAUGCUUCCGCUGAAGGUC 238
Monodelphis 234 AUUCACUCAUUGGUGGAAAUGCCUCUGCUGAAGGUC 269
Mus 307 ACUCGCUCAUCGGUGGAAAUGCUUCCGCUGAAGGUC 342
Oncorhynchus 208 ACUGUCUGUUGGGGGCAAAUGCAUCGGCGGAGGUGC 243
Gallus 205 ACUCUCUAAUUGGUGGCAAUGCCUCUGCUGAAGGUC 240
Oryctolagus 254 AUUCGCUCAUCGGUGGGAAUGCCUCCGCCGAAGGGC 289
Danio 210 AUGCCCUGAUUGGUGGCAAUGCGUCAGCAGAAGUUG 245
Bos 235 ACUCGCUCAUUGGUGGAAAUGCCUCCGCUGAAG-GC 269
Homo 340 ACUCGCUCAUUGGUGGAAAUGCCUCCGCUGAAG-GC 374
Sus 224 ACUCGCUCAUUGGUGGAAAUGCCUCCGCUGAAGGGC 259
Xenopus 196 AUGCGCUUAUUGGGGGCAAUGCCUCAGCAGAGUUCC 231
cons 361 * ** * ** * ***** ** ** ** 396
Rattus 239 C-GGA-GGGCGAAGGUACCGAAAGCACAGUAGUCAC 272
Monodelphis 270 C-UGA-GGGUGAAGGAACAGAUGCCACUGUAAUCAC 303
Mus 343 C-GGA-GGGCGAAGGUACCGAAAGCACAGUAGUCAC 376
Oncorhynchus 244 A-GG----AUGACGGCUGCGAGUCCAGCACAGUCAG 274
Gallus 241 C-UGA-GGGAGAGGGGACAGAAGCCACGGUGAUAAC 274
Oryctolagus 290 C-GGAG-GGCGAAGGUACCGAAAGCACAGUGAUCAC 323
Danio 246 C-GG----AUGAGGGCUGUGACAGCACUUCUGUCAG 276
Bos 270 CCCGA-GGGCGAAGGUACCGAAAGCACAGUAAUCAC 304
Homo 375 CCCGA-GGGCGAAGGUACCGAAAGCACAGUAAUCAC 409
Sus 260 C-CGAGGGC-GAAGGUACCGAAAGCACAGUAAUCAC 293
Xenopus 232 A-GGA-GGACGACGUUGGUGGUUCAUCACUAACCAG 265
cons 397 * ** * * * 432
Rattus 273 CGGUGUUGACAUUGUCAUGAACCAUCACUUACAAGA 308
Monodelphis 304 UGGAGUUGAUAUAGUUAUAAACCAUCAUCUGCAAGA 339
Mus 377 CGGUGUUGACAUUGUCAUGAACCAUCACUUACAAGA 412
Oncorhynchus 275 UGGAGUGGACAUUGUCCUCAACCACAAACUGCAGGA 310
Gallus 275 CGGUGUGGAUAUAGUGAUAAACCACCACCUUCAGGA 310
Oryctolagus 324 UGGUGUUGAUAUUGUUAUGAACCAUCACCUGCAGGA 359
Danio 277 CGGUGUGGACAUAGUCCUCAACCACAAACUUCAGGA 312
Bos 305 UGGUGUCGAUAUUGUCAUGAACCAUCACUUGCAGGA 340
Homo 410 UGGUGUCGAUAUUGUCAUGAACCAUCACCUGCAGGA 445
Sus 294 UGGUGUCGAUAUUGUCAUGAACCAUCACCUGCAGGA 329
Xenopus 266 UGGGGUGGAUAUAGUAAUGAAUCACAAACUUCAGGA 301
cons 433 ** ** ** ** ** * ** ** * * ** ** 468
Rattus 309 AACCAGCUUCACAAAAGAGGCCUACAAAAAGUAUAU 344
Monodelphis 340 AACUAGCUUCACAAAAGAAUCCUACAAAAAGUACAU 375
Mus 413 AACCAGCUUCACAAAAGAGGCUUACAAAAAGUACAU 448
Oncorhynchus 311 GACAUCCUUCACCAAGGACUCAUACAAGGGCUACAU 346
Gallus 311 AACCAGCUUCACAAAAGAGUCGUACAAGAAGUACAU 346
Oryctolagus 360 AACCAGCUUCACAAAAGAAGCCUACAAGAAGUACAU 395
Danio 313 GACCUCCUACGACAAGAAGUCUUACACAGCCUACAU 348
Bos 341 AACCAGCUUCACAAAAGAAGCCUACAAGAAGUACAU 376
Homo 446 AACAAGUUUCACAAAAGAAGCCUACAAGAAGUACAU 481
Sus 330 AACCAGCUUCACAAAGGAAGCCUACAAGAAGUACAU 365
Xenopus 302 AACAGGCUUCACCAAGGACUCUUACAAGAAUUACAU 337
cons 469 ** * * ** * * **** ** ** 504
Rattus 345 CAAAGACUACAUGAAAUC 362
Monodelphis 376 CAAAGACUACAUGAAAUC 393
Mus 449 CAAAGACUACAUGAAAUC 466
Oncorhynchus 347 CAAGGACUACAUGAAGGC 364
Gallus 347 CAAGGACUACAUGAAAGC 364
Oryctolagus 396 CAAAGAUUACAUGAAAUC 413
Danio 349 CAAAGACUACAUGAAGGC 366
Bos 377 CAAAGAUUACAUGAAGUC 394
Homo 482 CAAAGAUUACAUGAAAUC 499
Sus 366 CAAAGAUUAUAUGAAGUC 383
Xenopus 338 CA------------AGGA 343
cons 505 ** * 522