Locus 62

Sequence ID Bsubt.0
Location 528,338 – 528,403
Length 65
Max. P 0.802318
window391 window392

overview

Window 1

Location 528,338 – 528,403
Length 65
Sequences 5
Columns 65
Reading direction forward
Mean pairwise identity 70.42
Mean single sequence MFE -21.04
Consensus MFE -15.78
Energy contribution -13.06
Covariance contribution -2.72
Combinations/Pair 1.67
Mean z-score -0.80
Structure conservation index 0.75
SVM decision value 0.62
SVM RNA-class probability 0.802318
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 528338 65 + 4214630
UUGGAGAAGUACUCAAGUGGCUGAAGAGGCGCCCCUGCUAAGGGUGUAGGUCGCGUAAGCGGCGC
...(((.....)))..(((.((....)).)))((((....)))).....(((((....))))).. ( -21.40)
>Blich.0 572331 65 + 4222334
AUGGAGAAGUACUCAAGUGGCUGAAGAGGCGCCCCUGCUAAGGGUGUAGGUCGCGUAAGCGGCGC
...(((.....)))..(((.((....)).)))((((....)))).....(((((....))))).. ( -21.40)
>Bclau.0 890724 65 + 4303871
AUGGAGAAGUACCCAAGUGGCUGAAGGGGCUCCCCUGCUAAGGGAGUAGGUCGUGUAAGCGGCGC
.........(((((...((((...((((....))))))))..)).))).(((((....))))).. ( -20.60)
>Bcere.0 824719 64 + 5224283
AUGGCCCGUUGGUCAAGUGGUU-AAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCC
..(((((((.((((........-..)))((((((.......))))))..))))))))........ ( -20.90)
>Banth.0 748023 64 + 5227293
AUGGCCCGUUGGUCAAGUGGUU-AAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCC
..(((((((.((((........-..)))((((((.......))))))..))))))))........ ( -20.90)
>consensus
AUGGAGAAGUACUCAAGUGGCUGAAGAGGCCCCCCUGCUAAGGGGGUAGGUCGCGUAAGCGGCGC
...........(((...........)))((((((.......)))))).....(((.......))) (-15.78 = -13.06 +  -2.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 528,338 – 528,403
Length 65
Sequences 5
Columns 65
Reading direction forward
Mean pairwise identity 70.42
Mean single sequence MFE -21.04
Consensus MFE -15.78
Energy contribution -13.06
Covariance contribution -2.72
Combinations/Pair 1.67
Mean z-score -0.80
Structure conservation index 0.75
SVM decision value 0.62
SVM RNA-class probability 0.802318
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 528338 65 + 4214630/0-65
UUGGAGAAGUACUCAAGUGGCUGAAGAGGCGCCCCUGCUAAGGGUGUAGGUCGCGUAAGCGGCGC
...(((.....)))..(((.((....)).)))((((....)))).....(((((....))))).. ( -21.40)
>Blich.0 572331 65 + 4222334/0-65
AUGGAGAAGUACUCAAGUGGCUGAAGAGGCGCCCCUGCUAAGGGUGUAGGUCGCGUAAGCGGCGC
...(((.....)))..(((.((....)).)))((((....)))).....(((((....))))).. ( -21.40)
>Bclau.0 890724 65 + 4303871/0-65
AUGGAGAAGUACCCAAGUGGCUGAAGGGGCUCCCCUGCUAAGGGAGUAGGUCGUGUAAGCGGCGC
.........(((((...((((...((((....))))))))..)).))).(((((....))))).. ( -20.60)
>Bcere.0 824719 64 + 5224283/0-65
AUGGCCCGUUGGUCAAGUGGUU-AAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCC
..(((((((.((((........-..)))((((((.......))))))..))))))))........ ( -20.90)
>Banth.0 748023 64 + 5227293/0-65
AUGGCCCGUUGGUCAAGUGGUU-AAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCC
..(((((((.((((........-..)))((((((.......))))))..))))))))........ ( -20.90)
>consensus
AUGGAGAAGUACUCAAGUGGCUGAAGAGGCCCCCCUGCUAAGGGGGUAGGUCGCGUAAGCGGCGC
...........(((...........)))((((((.......)))))).....(((.......))) (-15.78 = -13.06 +  -2.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:20:46 2006