Locus 61

Sequence ID Blich.0
Location 572,263 – 572,325
Length 62
Max. P 0.999970
window389 window390

overview

Window 9

Location 572,263 – 572,325
Length 62
Sequences 5
Columns 62
Reading direction reverse
Mean pairwise identity 96.13
Mean single sequence MFE -20.80
Consensus MFE -21.28
Energy contribution -20.80
Covariance contribution -0.48
Combinations/Pair 1.06
Mean z-score -2.52
Structure conservation index 1.02
SVM decision value 5.03
SVM RNA-class probability 0.999970
Prediction RNA

Download alignment: ClustalW | MAF

>Blich.0 572263 62 + 4222334
ACAGGCAGGAUUCGAACCUGCGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. ( -21.60)
>Bclau.0 890656 62 + 4303871
ACAGGCAGGAUUCGAACCUGCGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. ( -21.60)
>Bsubt.0 528270 62 + 4214630
ACAGGCAGGAUUCGAACCUGCGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. ( -21.60)
>Bcere.0 824651 62 + 5224283
GCAGGUAGGACUCGAACCUACGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. ( -19.60)
>Banth.0 747955 62 + 5227293
GCAGGUAGGACUCGAACCUACGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. ( -19.60)
>consensus
ACAGGCAGGAUUCGAACCUGCGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. (-21.28 = -20.80 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 572,263 – 572,325
Length 62
Sequences 5
Columns 62
Reading direction reverse
Mean pairwise identity 96.13
Mean single sequence MFE -20.80
Consensus MFE -21.28
Energy contribution -20.80
Covariance contribution -0.48
Combinations/Pair 1.06
Mean z-score -2.52
Structure conservation index 1.02
SVM decision value 5.03
SVM RNA-class probability 0.999970
Prediction RNA

Download alignment: ClustalW | MAF

>Blich.0 572263 62 + 4222334/0-62
ACAGGCAGGAUUCGAACCUGCGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. ( -21.60)
>Bclau.0 890656 62 + 4303871/0-62
ACAGGCAGGAUUCGAACCUGCGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. ( -21.60)
>Bsubt.0 528270 62 + 4214630/0-62
ACAGGCAGGAUUCGAACCUGCGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. ( -21.60)
>Bcere.0 824651 62 + 5224283/0-62
GCAGGUAGGACUCGAACCUACGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. ( -19.60)
>Banth.0 747955 62 + 5227293/0-62
GCAGGUAGGACUCGAACCUACGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. ( -19.60)
>consensus
ACAGGCAGGAUUCGAACCUGCGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUAC
....(((((.......))))).....((((((.....))))))(((((.......))))).. (-21.28 = -20.80 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:20:45 2006