Locus 57

Sequence ID Bsubt.0
Location 118,532 – 118,585
Length 53
Max. P 0.631033
window378 window379

overview

Window 8

Location 118,532 – 118,585
Length 53
Sequences 3
Columns 62
Reading direction forward
Mean pairwise identity 83.05
Mean single sequence MFE -17.60
Consensus MFE -12.64
Energy contribution -12.75
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.80
Structure conservation index 0.72
SVM decision value 0.20
SVM RNA-class probability 0.631033
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 118532 53 + 4214630
UUGAGUGGGAGGGUUUA---------CCCUAUUACCACAUCACGGACUUAAGGAGGUGUGUC
..((((((.((((....---------))))....)))).))(((.((((....)))).))). ( -17.00)
>Blich.0 117489 53 + 4222334
UUGAGUGGGAGGGUUCA---------CCCUAUUACCACAUCACGGACUUAAGGAGGUGUGUC
..((((((.((((....---------))))....)))).))(((.((((....)))).))). ( -17.00)
>Bclau.0 166547 62 + 4303871
UUGAGUGGGAGGGUACAAGUUGUGUAUCCGGUAACCACAUCACGGACUUAAGGAGGUGUGUC
..((((((..(((((((.....))))))).....)))).))(((.((((....)))).))). ( -18.80)
>consensus
UUGAGUGGGAGGGUUCA_________CCCUAUUACCACAUCACGGACUUAAGGAGGUGUGUC
..((((((.((((.............))))....)))).))(((.((((....)))).))). (-12.64 = -12.75 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 118,532 – 118,585
Length 53
Sequences 3
Columns 62
Reading direction forward
Mean pairwise identity 83.05
Mean single sequence MFE -17.60
Consensus MFE -12.64
Energy contribution -12.75
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.80
Structure conservation index 0.72
SVM decision value 0.20
SVM RNA-class probability 0.631033
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 118532 53 + 4214630/0-62
UUGAGUGGGAGGGUUUA---------CCCUAUUACCACAUCACGGACUUAAGGAGGUGUGUC
..((((((.((((....---------))))....)))).))(((.((((....)))).))). ( -17.00)
>Blich.0 117489 53 + 4222334/0-62
UUGAGUGGGAGGGUUCA---------CCCUAUUACCACAUCACGGACUUAAGGAGGUGUGUC
..((((((.((((....---------))))....)))).))(((.((((....)))).))). ( -17.00)
>Bclau.0 166547 62 + 4303871/0-62
UUGAGUGGGAGGGUACAAGUUGUGUAUCCGGUAACCACAUCACGGACUUAAGGAGGUGUGUC
..((((((..(((((((.....))))))).....)))).))(((.((((....)))).))). ( -18.80)
>consensus
UUGAGUGGGAGGGUUCA_________CCCUAUUACCACAUCACGGACUUAAGGAGGUGUGUC
..((((((.((((.............))))....)))).))(((.((((....)))).))). (-12.64 = -12.75 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:20:37 2006