Locus 56

Sequence ID Bsubt.0
Location 95,850 – 95,947
Length 97
Max. P 0.999710
window374 window375 window376 window377

overview

Window 4

Location 95,850 – 95,947
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 85.63
Mean single sequence MFE -49.72
Consensus MFE -41.12
Energy contribution -44.68
Covariance contribution 3.56
Combinations/Pair 1.16
Mean z-score -4.36
Structure conservation index 0.83
SVM decision value 3.76
SVM RNA-class probability 0.999592
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 95850 97 + 4214630
UCCACGCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCAAGUCCGGCCCUCGGCAU-UAUGU
.....((((((((((..(((((((((......(((((.......)))))((((((....)))))))))))))))....)).)))).))))..-..... ( -47.60)
>Bclau.0 142410 97 + 4303871
CCCGUGCCGGGAUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCAAGUCCGGCUCUCGGCAU-ACUGC
...((((((((((((..(((((((((......(((((.......)))))((((((....)))))))))))))))....)))..)))))))))-..... ( -47.00)
>Bhalo.0 123861 98 + 4202352
UCUGUGCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCAAGUCCGGCCCUCGGCACCAGUAA
.((((((((((((((..(((((((((......(((((.......)))))((((((....)))))))))))))))....)).)))).))))).)))... ( -51.00)
>Banth.0 746830 97 + 5227293
GACAUGCCGGGGUGGCGGAACAGGCAGACGCACAGGACUUAAAAUCCUGCGGUGGGUGACCACCGUGCGGGUUCGACCCCCGCCCUCGGCAC-CAUAU
....(((((((((((.((..(..((...(((((((((.......))))..(((((....)))))))))).))..)..)))))))).))))).-..... ( -51.50)
>Bcere.0 823523 97 + 5224283
GACAUGCCGGGGUGGCGGAACAGGCAGACGCACAGGACUUAAAAUCCUGCGGUGGGUGACCACCGUGCGGGUUCGACCCCCGCCCUCGGCAC-CAUAU
....(((((((((((.((..(..((...(((((((((.......))))..(((((....)))))))))).))..)..)))))))).))))).-..... ( -51.50)
>consensus
GCCAUGCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCAAGUCCGGCCCUCGGCAC_AAUAU
...((((((((((((..(((((((((......(((((.......)))))((((((....)))))))))))))))....)).)))).))))))...... (-41.12 = -44.68 +   3.56)

alignment

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secondary structure

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dotplot

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Window 5

Location 95,850 – 95,947
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 85.63
Mean single sequence MFE -43.70
Consensus MFE -41.02
Energy contribution -40.18
Covariance contribution -0.84
Combinations/Pair 1.21
Mean z-score -3.03
Structure conservation index 0.94
SVM decision value 3.93
SVM RNA-class probability 0.999710
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 95850 97 + 4214630
ACAUA-AUGCCGAGGGCCGGACUUGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCACCCCGGCGUGGA
.....-((((((.(((((((.......)))))..(((((.(((.....(((((((.....)))))))))).)))))..........)).))))))... ( -42.10)
>Bclau.0 142410 97 + 4303871
GCAGU-AUGCCGAGAGCCGGACUUGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCAUCCCGGCACGGG
.....-.(((((.(((((((.......)))))..(((((.(((.....(((((((.....)))))))))).)))))..........)).))))).... ( -39.30)
>Bhalo.0 123861 98 + 4202352
UUACUGGUGCCGAGGGCCGGACUUGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCACCCCGGCACAGA
...(((.(((((.(((((((.......)))))..(((((.(((.....(((((((.....)))))))))).)))))..........)).)))))))). ( -45.10)
>Banth.0 746830 97 + 5227293
AUAUG-GUGCCGAGGGCGGGGGUCGAACCCGCACGGUGGUCACCCACCGCAGGAUUUUAAGUCCUGUGCGUCUGCCUGUUCCGCCACCCCGGCAUGUC
.....-((((((..(((((((((.((...(((..(((((....)))))(((((((.....)))))))))))).))))...)))))....))))))... ( -46.00)
>Bcere.0 823523 97 + 5224283
AUAUG-GUGCCGAGGGCGGGGGUCGAACCCGCACGGUGGUCACCCACCGCAGGAUUUUAAGUCCUGUGCGUCUGCCUGUUCCGCCACCCCGGCAUGUC
.....-((((((..(((((((((.((...(((..(((((....)))))(((((((.....)))))))))))).))))...)))))....))))))... ( -46.00)
>consensus
AUAUG_GUGCCGAGGGCCGGACUUGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCACCCCGGCAUGGA
......((((((.(((((((.......)))))..(((((.((.....((((((((.....)))))))))).)))))..........)).))))))... (-41.02 = -40.18 +  -0.84)

alignment

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secondary structure

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dotplot

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Window 6

Location 95,850 – 95,947
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 85.63
Mean single sequence MFE -49.72
Consensus MFE -41.12
Energy contribution -44.68
Covariance contribution 3.56
Combinations/Pair 1.16
Mean z-score -4.36
Structure conservation index 0.83
SVM decision value 3.76
SVM RNA-class probability 0.999592
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 95850 97 + 4214630/0-98
UCCACGCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCAAGUCCGGCCCUCGGCAU-UAUGU
.....((((((((((..(((((((((......(((((.......)))))((((((....)))))))))))))))....)).)))).))))..-..... ( -47.60)
>Bclau.0 142410 97 + 4303871/0-98
CCCGUGCCGGGAUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCAAGUCCGGCUCUCGGCAU-ACUGC
...((((((((((((..(((((((((......(((((.......)))))((((((....)))))))))))))))....)))..)))))))))-..... ( -47.00)
>Bhalo.0 123861 98 + 4202352/0-98
UCUGUGCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCAAGUCCGGCCCUCGGCACCAGUAA
.((((((((((((((..(((((((((......(((((.......)))))((((((....)))))))))))))))....)).)))).))))).)))... ( -51.00)
>Banth.0 746830 97 + 5227293/0-98
GACAUGCCGGGGUGGCGGAACAGGCAGACGCACAGGACUUAAAAUCCUGCGGUGGGUGACCACCGUGCGGGUUCGACCCCCGCCCUCGGCAC-CAUAU
....(((((((((((.((..(..((...(((((((((.......))))..(((((....)))))))))).))..)..)))))))).))))).-..... ( -51.50)
>Bcere.0 823523 97 + 5224283/0-98
GACAUGCCGGGGUGGCGGAACAGGCAGACGCACAGGACUUAAAAUCCUGCGGUGGGUGACCACCGUGCGGGUUCGACCCCCGCCCUCGGCAC-CAUAU
....(((((((((((.((..(..((...(((((((((.......))))..(((((....)))))))))).))..)..)))))))).))))).-..... ( -51.50)
>consensus
GCCAUGCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCAAGUCCGGCCCUCGGCAC_AAUAU
...((((((((((((..(((((((((......(((((.......)))))((((((....)))))))))))))))....)).)))).))))))...... (-41.12 = -44.68 +   3.56)

alignment

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secondary structure

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dotplot

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Window 7

Location 95,850 – 95,947
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 85.63
Mean single sequence MFE -43.70
Consensus MFE -41.02
Energy contribution -40.18
Covariance contribution -0.84
Combinations/Pair 1.21
Mean z-score -3.03
Structure conservation index 0.94
SVM decision value 3.93
SVM RNA-class probability 0.999710
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 95850 97 + 4214630/0-98
ACAUA-AUGCCGAGGGCCGGACUUGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCACCCCGGCGUGGA
.....-((((((.(((((((.......)))))..(((((.(((.....(((((((.....)))))))))).)))))..........)).))))))... ( -42.10)
>Bclau.0 142410 97 + 4303871/0-98
GCAGU-AUGCCGAGAGCCGGACUUGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCAUCCCGGCACGGG
.....-.(((((.(((((((.......)))))..(((((.(((.....(((((((.....)))))))))).)))))..........)).))))).... ( -39.30)
>Bhalo.0 123861 98 + 4202352/0-98
UUACUGGUGCCGAGGGCCGGACUUGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCACCCCGGCACAGA
...(((.(((((.(((((((.......)))))..(((((.(((.....(((((((.....)))))))))).)))))..........)).)))))))). ( -45.10)
>Banth.0 746830 97 + 5227293/0-98
AUAUG-GUGCCGAGGGCGGGGGUCGAACCCGCACGGUGGUCACCCACCGCAGGAUUUUAAGUCCUGUGCGUCUGCCUGUUCCGCCACCCCGGCAUGUC
.....-((((((..(((((((((.((...(((..(((((....)))))(((((((.....)))))))))))).))))...)))))....))))))... ( -46.00)
>Bcere.0 823523 97 + 5224283/0-98
AUAUG-GUGCCGAGGGCGGGGGUCGAACCCGCACGGUGGUCACCCACCGCAGGAUUUUAAGUCCUGUGCGUCUGCCUGUUCCGCCACCCCGGCAUGUC
.....-((((((..(((((((((.((...(((..(((((....)))))(((((((.....)))))))))))).))))...)))))....))))))... ( -46.00)
>consensus
AUAUG_GUGCCGAGGGCCGGACUUGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCACCCCGGCAUGGA
......((((((.(((((((.......)))))..(((((.((.....((((((((.....)))))))))).)))))..........)).))))))... (-41.02 = -40.18 +  -0.84)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:20:36 2006