Locus 55

Sequence ID Banth.0
Location 157,536 – 157,655
Length 119
Max. P 0.999071
window372 window373

overview

Window 2

Location 157,536 – 157,644
Length 108
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 73.18
Mean single sequence MFE -31.85
Consensus MFE -26.07
Energy contribution -23.69
Covariance contribution -2.38
Combinations/Pair 1.36
Mean z-score -1.33
Structure conservation index 0.82
SVM decision value 1.04
SVM RNA-class probability 0.904491
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 157536 108 + 5227293/0-120
UAAUGAUUUAAGUAAAAGCUUGCGGUUGUGAUGAACAACCGGGAGUCAUCCGCCGAAAUCUCGAUAAACCC-CACCUCGUCAACUACACUACU-----------UGUAGUUCUGGCGCUU
....(((((..((....((((.(((((((.....))))))).)))).....))..)))))...........-.....(((((((((((.....-----------))))))..)))))... ( -29.30)
>Bcere.0 157538 108 + 5224283/0-120
UAAUGAUUUAAGUAAAAGCUUGCGGUUGUGAUGAACAACCGGGAGCCAUCCGCCGAAAUCUCGAUAAACCC-CACCUCGUCAACUACACUACU-----------UGUAGUUCUGGCGCUU
....(((((..((....((((.(((((((.....))))))).)))).....))..)))))...........-.....(((((((((((.....-----------))))))..)))))... ( -30.90)
>Bhalo.0 288775 120 + 4202352/0-120
CUCUGUUUUUUACAAAAGCUUGCGGCUGUCAUGUGCAACCGGAGGGCAUCCGCCGAACCUUCGAUAAACCCUCUCCUCGUCAACUAUUCCGUUACCGUCCGUGGAAUAGUCCUGGCGCUU
...............((((...(((.(((.....))).)))(((((.......(((....))).....))))).....(((((((((((((..........)))))))))..)))))))) ( -28.80)
>Bclau.0 270902 108 + 4303871/0-120
CAUUGUUUU-GACAAAAGCUUGCGGCUGUCACACGCAGCCGGAGGGAACCCGCCGAAAGUUCGAUUAGCCCUCUCCUCGUCAACUGGCGUCAU-----------GCCAGUCCUGGCGCUU
..((((...-.))))((((...(((((((.....)))))))(((((....((.(....)..)).....))))).....((((((((((.....-----------))))))..)))))))) ( -38.40)
>consensus
CAAUGAUUUAAACAAAAGCUUGCGGCUGUCAUGAACAACCGGAAGGCAUCCGCCGAAAUCUCGAUAAACCC_CACCUCGUCAACUACACUACU___________UGUAGUCCUGGCGCUU
..................(((.(((((((.....))))))).)))......(((((....)))...............((((((((((................))))))..)))))).. (-26.07 = -23.69 +  -2.38)

alignment

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secondary structure

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dotplot

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Window 3

Location 157,536 – 157,655
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.80
Mean single sequence MFE -41.63
Consensus MFE -36.72
Energy contribution -36.60
Covariance contribution -0.12
Combinations/Pair 1.39
Mean z-score -2.50
Structure conservation index 0.88
SVM decision value 3.36
SVM RNA-class probability 0.999071
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 157536 119 + 5227293/29-149
UAGUGUAGUUGACGAGGUG-GGGUUUAUCGAGAUUUCGGCGGAUGACUCCCGGUUGUUCAUCACAACCGCAAGCUUUUACUUAAAUCAUUAAGGUGACUUAGUGGACAAAGGUGAAAGUG
...((..((((....(.((-..((((....))))..)).)(((..((.....))..)))....))))..)).((((((((((...((((((((....))))))))....)))))))))). ( -38.20)
>Bcere.0 157538 119 + 5224283/29-149
UAGUGUAGUUGACGAGGUG-GGGUUUAUCGAGAUUUCGGCGGAUGGCUCCCGGUUGUUCAUCACAACCGCAAGCUUUUACUUAAAUCAUUAAGGUGACUUAGUGGACAAAGGUGAAAGUG
...((..((((....(.((-..((((....))))..)).)(((..((.....))..)))....))))..)).((((((((((...((((((((....))))))))....)))))))))). ( -38.50)
>Bhalo.0 288775 120 + 4202352/29-149
CGGAAUAGUUGACGAGGAGAGGGUUUAUCGAAGGUUCGGCGGAUGCCCUCCGGUUGCACAUGACAGCCGCAAGCUUUUGUAAAAAACAGAGGGGCGACCUUCUGGACAAAGGCAAAAGCG
........(((.(..((((.(.(((..((((....))))..))).).))))((((((....).)))))))))((((((((......(((((((....))))))).......)))))))). ( -45.02)
>Bclau.0 270902 119 + 4303871/29-149
GACGCCAGUUGACGAGGAGAGGGCUAAUCGAACUUUCGGCGGGUUCCCUCCGGCUGCGUGUGACAGCCGCAAGCUUUUGUC-AAAACAAUGGGGUGACCUGUUGCACAAAAACAAAAGCA
...((..........((((.(((((..((((....))))..))))).))))(((((.......)))))))..((((((((.-....(((((((....))))))).......)))))))). ( -44.80)
>consensus
UAGUGUAGUUGACGAGGAG_GGGUUUAUCGAAAUUUCGGCGGAUGCCCCCCGGUUGCUCAUCACAACCGCAAGCUUUUACUUAAAACAUUAAGGUGACCUAGUGGACAAAGGCAAAAGCG
........(((.(..((((.(.(((..((((....))))..))).).))))(((((.......)))))))))((((((((((....(((((((....))))))).....)))))))))). (-36.72 = -36.60 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:20:33 2006