Locus 52

Sequence ID Bcere.0
Location 205,342 – 205,461
Length 119
Max. P 0.991858
window337 window338

overview

Window 7

Location 205,342 – 205,461
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 72.54
Mean single sequence MFE -28.70
Consensus MFE -23.31
Energy contribution -24.62
Covariance contribution 1.31
Combinations/Pair 1.27
Mean z-score -1.08
Structure conservation index 0.81
SVM decision value 0.56
SVM RNA-class probability 0.780695
Prediction RNA

Download alignment: ClustalW | MAF

>Bcere.0 205342 119 + 5224283/27-147
-UCCUCUCUUAUCUUCCAAAACGAGAACUCGUUUUGCAGGAAUUAGCACCUUAGCUUAUACGUUAUAAGCUCGGUUGCCGGGCAUCAUCGGGCCAGUCCCUCCGCCACUCUUGAUAAGAG
-....((((((((...((((((((....))))))))..(((....(((.((.((((((((...)))))))).)).)))..(((........)))......))).........)))))))) ( -36.50)
>Banth.0 177134 119 + 5227293/27-147
-UCCUCUCUUAUCUUCCAAAACGAAAACUCAUUUUGCAGGAAUUAGCACCUUAGCUUAUACGUCAUAAGCUCGGUUGCCGGGCAUCAUCGGGCCAGUCCCUCCGCCACUCUUGAUAAGAG
-....((((((((...(((((.((....)).)))))..(((....(((.((.(((((((.....))))))).)).)))..(((........)))......))).........)))))))) ( -29.70)
>Bclau.0 3104554 111 + 4303871/27-147
CUUCCCUCUCAUCUCCCAAAGCCCAUA--UGCUUUGCAGGAUUUAGCACCUUCAAGCGAACUU-------GCGGUUGCCGGGUUUCAUUGGGCCAGUCCCUCCACCUCUCUCGAUAAGAA
......(((.(((...((((((.....--.))))))..(((((..(((.((.((((....)))-------).)).)))..((((......))))))))).............))).))). ( -23.30)
>Bsubt.0 217710 110 - 4214630/27-147
--UCCGCCUCAUCUGCAAGAACGCAA---UGUUCUUAAGGAUUUAGCACCAUUCUGUUUGAAACA-----GCGGUUGCCGGGUAUCAUAGGGCCAGUCCCUCCACCUCUCUUGAUAAGGU
--...((((.(((...((((((....---.)))))).((((((..(((((...((((.....)))-----).)).)))..))).....((((.....))))...))).....))).)))) ( -25.30)
>consensus
_UCCCCUCUCAUCUUCCAAAACGAAAA__CGUUUUGCAGGAAUUAGCACCUUAGCGUAUACGUCA_____GCGGUUGCCGGGCAUCAUCGGGCCAGUCCCUCCACCACUCUUGAUAAGAG
.....((((((((...(((((((......)))))))..(((....(((((..(((((((.....))))))).)).)))..(((........)))......))).........)))))))) (-23.31 = -24.62 +   1.31)

alignment

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secondary structure

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dotplot

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Window 8

Location 205,342 – 205,461
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 72.54
Mean single sequence MFE -37.55
Consensus MFE -28.74
Energy contribution -29.93
Covariance contribution 1.19
Combinations/Pair 1.28
Mean z-score -1.90
Structure conservation index 0.77
SVM decision value 2.29
SVM RNA-class probability 0.991858
Prediction RNA

Download alignment: ClustalW | MAF

>Bcere.0 205342 119 + 5224283/27-147
CUCUUAUCAAGAGUGGCGGAGGGACUGGCCCGAUGAUGCCCGGCAACCGAGCUUAUAACGUAUAAGCUAAGGUGCUAAUUCCUGCAAAACGAGUUCUCGUUUUGGAAGAUAAGAGAGGA-
((((((((..((((((((..(((.....))).....)))).((((.((.((((((((...))))))))..)))))).))))...((((((((....))))))))...))))))))....- ( -43.20)
>Banth.0 177134 119 + 5227293/27-147
CUCUUAUCAAGAGUGGCGGAGGGACUGGCCCGAUGAUGCCCGGCAACCGAGCUUAUGACGUAUAAGCUAAGGUGCUAAUUCCUGCAAAAUGAGUUUUCGUUUUGGAAGAUAAGAGAGGA-
((((((((..((((((((..(((.....))).....)))).((((.((.((((((((...))))))))..)))))).))))...(((((((......)))))))...))))))))....- ( -39.80)
>Bclau.0 3104554 111 + 4303871/27-147
UUCUUAUCGAGAGAGGUGGAGGGACUGGCCCAAUGAAACCCGGCAACCGC-------AAGUUCGCUUGAAGGUGCUAAAUCCUGCAAAGCA--UAUGGGCUUUGGGAGAUGAGAGGGAAG
.(((..((....))...)))(((.....))).......(((((((.((.(-------(((....))))..))))))..(((.(.((((((.--.....)))))).).)))....)))... ( -32.90)
>Bsubt.0 217710 110 - 4214630/27-147
ACCUUAUCAAGAGAGGUGGAGGGACUGGCCCUAUGAUACCCGGCAACCGC-----UGUUUCAAACAGAAUGGUGCUAAAUCCUUAAGAACA---UUGCGUUCUUGCAGAUGAGGCGGA--
.((((((((((.((((((.((((.....))))....)))).((((.((.(-----(((.....))))...))))))...)))))((((((.---....))))))...)))))))....-- ( -34.30)
>consensus
CUCUUAUCAAGAGAGGCGGAGGGACUGGCCCGAUGAUACCCGGCAACCGA_____UGACGUAUAAGCUAAGGUGCUAAAUCCUGCAAAACA__UUUGCGUUUUGGAAGAUAAGAGAGAA_
((((((((....(.((((..(((.....))).....)))))((((.((..(((((((...)))))))...))))))........(((((((......)))))))...))))))))..... (-28.74 = -29.93 +   1.19)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:20:05 2006