Locus 49

Sequence ID Banth.0
Location 4,649,937 – 4,650,010
Length 73
Max. P 0.999167
window304 window305 window306 window307

overview

Window 4

Location 4,649,937 – 4,650,010
Length 73
Sequences 5
Columns 73
Reading direction forward
Mean pairwise identity 99.45
Mean single sequence MFE -26.40
Consensus MFE -26.40
Energy contribution -26.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 1.00
SVM decision value 0.93
SVM RNA-class probability 0.884279
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 4649937 73 + 5227293
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCACUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. ( -26.40)
>Blich.0 3115486 73 + 4222334
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCACUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. ( -26.40)
>Bcere.0 4648916 73 + 5224283
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCACUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. ( -26.40)
>Bclau.0 3412977 73 - 4303871
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCACUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. ( -26.40)
>Bsubt.0 3170924 73 + 4214630
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCGCUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. ( -26.40)
>consensus
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCACUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. (-26.40 = -26.40 +   0.00)

alignment

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secondary structure

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dotplot

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Window 5

Location 4,649,937 – 4,650,010
Length 73
Sequences 5
Columns 73
Reading direction reverse
Mean pairwise identity 99.45
Mean single sequence MFE -30.40
Consensus MFE -30.40
Energy contribution -30.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.45
Structure conservation index 1.00
SVM decision value 3.41
SVM RNA-class probability 0.999167
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 4649937 73 + 5227293
GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. ( -30.40)
>Blich.0 3115486 73 + 4222334
GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. ( -30.40)
>Bcere.0 4648916 73 + 5224283
GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. ( -30.40)
>Bclau.0 3412977 73 - 4303871
GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. ( -30.40)
>Bsubt.0 3170924 73 + 4214630
GGCCCGUUGGUCAAGCGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. ( -30.40)
>consensus
GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. (-30.40 = -30.40 +   0.00)

alignment

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secondary structure

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dotplot

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Window 6

Location 4,649,937 – 4,650,010
Length 73
Sequences 5
Columns 73
Reading direction forward
Mean pairwise identity 99.45
Mean single sequence MFE -26.40
Consensus MFE -26.40
Energy contribution -26.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 1.00
SVM decision value 0.93
SVM RNA-class probability 0.884279
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 4649937 73 + 5227293/0-73
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCACUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. ( -26.40)
>Blich.0 3115486 73 + 4222334/0-73
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCACUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. ( -26.40)
>Bcere.0 4648916 73 + 5224283/0-73
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCACUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. ( -26.40)
>Bclau.0 3412977 73 - 4303871/0-73
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCACUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. ( -26.40)
>Bsubt.0 3170924 73 + 4214630/0-73
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCGCUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. ( -26.40)
>consensus
AUGACCCGUACGGGAUUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCACUUGACCAACGGGCC
....((((((((((.......)))))..(((((((.......))))))).................))))).. (-26.40 = -26.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 4,649,937 – 4,650,010
Length 73
Sequences 5
Columns 73
Reading direction reverse
Mean pairwise identity 99.45
Mean single sequence MFE -30.40
Consensus MFE -30.40
Energy contribution -30.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.45
Structure conservation index 1.00
SVM decision value 3.41
SVM RNA-class probability 0.999167
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 4649937 73 + 5227293/0-73
GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. ( -30.40)
>Blich.0 3115486 73 + 4222334/0-73
GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. ( -30.40)
>Bcere.0 4648916 73 + 5224283/0-73
GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. ( -30.40)
>Bclau.0 3412977 73 - 4303871/0-73
GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. ( -30.40)
>Bsubt.0 3170924 73 + 4214630/0-73
GGCCCGUUGGUCAAGCGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. ( -30.40)
>consensus
GGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAU
(((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))).. (-30.40 = -30.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:19:41 2006