Locus 48

Sequence ID Banth.0
Location 4,530,805 – 4,530,923
Length 118
Max. P 0.999987
window302 window303

overview

Window 2

Location 4,530,805 – 4,530,923
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 74.58
Mean single sequence MFE -35.81
Consensus MFE -22.58
Energy contribution -22.70
Covariance contribution 0.12
Combinations/Pair 1.22
Mean z-score -4.44
Structure conservation index 0.63
SVM decision value 4.99
SVM RNA-class probability 0.999967
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 4530805 118 + 5227293/0-120
ACAAAAAACCUCUCAUCCCUAGAAAGGGACGAGAGGUU--AUAGAUUCCCGCGGUACCACCCUAAAUUAAUGUACAAAAAAUAUACAUUCGCUUAGAUCCGUAACGUGGAUUAACGGCAA
......((((((((.(((((....))))).))))))))--........(((((.(((....((((.(.((((((.........)))))).).))))....))).)))))........... ( -34.10)
>Bcere.0 4511843 115 + 5224283/0-120
ACAAAAAACCUCUCAUCCCUAGAAAGGGACGAGAGGUU--AUAGAUUCCCGCGGUACCACCCUAAAUUAAUGUACAA---AUAUACAUUCGCUUAGAUCCGUAACGUGGAUUAACGGCAA
......((((((((.(((((....))))).))))))))--........(((((.(((....((((.(.((((((...---...)))))).).))))....))).)))))........... ( -35.10)
>Bclau.0 3001085 116 + 4303871/0-120
ACAAAAAAACUCUCUCCC---AAAAGGGACGAGAGUUUGCAUACAUUCCCGCGGUGCCACCC-ACAUUAACAGGCAUCGCCUGUUCACUUACACAUAACGGUGUGUCCCGUUAAGAGCUA
......((((((((((((---....)))).))))))))((..........((((((((....-.........))))))))...............((((((......))))))...)).. ( -38.22)
>consensus
ACAAAAAACCUCUCAUCCCUAGAAAGGGACGAGAGGUU__AUAGAUUCCCGCGGUACCACCCUAAAUUAAUGUACAA___AUAUACAUUCGCUUAGAUCCGUAACGUGGAUUAACGGCAA
......((((((((.(((((....))))).))))))))............((.((..............((((.......))))...........((((((.....)))))).)).)).. (-22.58 = -22.70 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 4,530,805 – 4,530,923
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 74.58
Mean single sequence MFE -43.37
Consensus MFE -29.36
Energy contribution -29.27
Covariance contribution -0.09
Combinations/Pair 1.27
Mean z-score -4.26
Structure conservation index 0.68
SVM decision value 5.44
SVM RNA-class probability 0.999987
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 4530805 118 + 5227293/0-120
UUGCCGUUAAUCCACGUUACGGAUCUAAGCGAAUGUAUAUUUUUUGUACAUUAAUUUAGGGUGGUACCGCGGGAAUCUAU--AACCUCUCGUCCCUUUCUAGGGAUGAGAGGUUUUUUGU
((.((((....((((........((((((..((((((((.....))))))))..))))))))))....)))).)).....--((((((((((((((....))))))))))))))...... ( -45.00)
>Bcere.0 4511843 115 + 5224283/0-120
UUGCCGUUAAUCCACGUUACGGAUCUAAGCGAAUGUAUAU---UUGUACAUUAAUUUAGGGUGGUACCGCGGGAAUCUAU--AACCUCUCGUCCCUUUCUAGGGAUGAGAGGUUUUUUGU
((.((((....((((........((((((..(((((((..---..)))))))..))))))))))....)))).)).....--((((((((((((((....))))))))))))))...... ( -43.40)
>Bclau.0 3001085 116 + 4303871/0-120
UAGCUCUUAACGGGACACACCGUUAUGUGUAAGUGAACAGGCGAUGCCUGUUAAUGU-GGGUGGCACCGCGGGAAUGUAUGCAAACUCUCGUCCCUUUU---GGGAGAGAGUUUUUUUGU
.......((((((......))))))((((((....(((((((...)))))))..(((-((......)))))......))))))(((((((.((((....---)))))))))))....... ( -41.70)
>consensus
UUGCCGUUAAUCCACGUUACGGAUCUAAGCGAAUGUAUAU___UUGUACAUUAAUUUAGGGUGGUACCGCGGGAAUCUAU__AACCUCUCGUCCCUUUCUAGGGAUGAGAGGUUUUUUGU
...((..................((((((..((((((((.....))))))))..))))))(((....)))))..........((((((((((((((....))))))))))))))...... (-29.36 = -29.27 +  -0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:19:38 2006