Locus 45

Sequence ID Banth.0
Location 2,433,595 – 2,433,715
Length 120
Max. P 0.992664
window285 window286

overview

Window 5

Location 2,433,595 – 2,433,715
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 69.75
Mean single sequence MFE -34.95
Consensus MFE -22.67
Energy contribution -22.93
Covariance contribution 0.25
Combinations/Pair 1.28
Mean z-score -1.95
Structure conservation index 0.65
SVM decision value 2.34
SVM RNA-class probability 0.992664
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 2433595 120 + 5227293/0-120
CCACUAGGGGGGCCUAUUAUAGGCUGAGAUCAAAUUGGAAUUUGAGACUCUUAGUACCUGAUCUGGUUAAUGCCAGCGUAGGGAAGUGGGAAAGACAUUGCUAUUUCAUGUAUAAAUACU
..((((((((((((((...))))))....((((((....))))))..)))))))).((((..(((((....)))))..))))(((((((.((.....)).)))))))............. ( -37.30)
>Bcere.0 2504742 120 + 5224283/0-120
CCACUAGGGGGGCCUAUUAUAGGCUGAGAUCAAAUUGGAAUUUGAGACUCUUAGUACCUGAUCUGGUUAAUGCCAGCGUAGGGAAGUGGGAAAGACAUUGCUAUUUAAUAAAUAAAAACU
..((((((((((((((...))))))....((((((....))))))..)))))))).((((..(((((....)))))..)))).((((((.((.....)).)))))).............. ( -33.80)
>Bclau.0 3474101 113 - 4303871/0-120
CCACUAGGGGAGCCAUCU---GGCUGAGA--AAAGCGCUGCUUU-GACCCUUUGAACCUGAUCUGGCUUGUACCAGCGUAGGGAAGUGGAGAACA-AUUGCUUAUUCAUGUAAAGCAACU
((((((((((((((....---))))....--(((((...)))))-..)))))....((((..((((......))))..))))..)))))......-.((((((.........)))))).. ( -34.00)
>Bhalo.0 902234 114 + 4202352/0-120
CCACUAGGGGUGUCGAAA---GACUGAGA--GAGGCGAAUCCUC-AACUCUUGGAACCUGAUCUAGUUCAUACUAGCGAAGGGAAGUGGCGCAUUUCGUGAAAACUAGUUUACGAUAAUC
((((((((((((((....---))).....--((((.....))))-.))))))....(((...(((((....)))))...)))..)))))......(((((((......)))))))..... ( -34.70)
>consensus
CCACUAGGGGGGCCUAUU___GGCUGAGA__AAAGCGGAACUUG_GACUCUUAGAACCUGAUCUGGUUAAUACCAGCGUAGGGAAGUGGGAAAGACAUUGCUAAUUAAUGUAUAAAAACU
((((((((((((((.......))))....((((((....))))))..)))))....((((..(((((....)))))..))))..)))))............................... (-22.67 = -22.93 +   0.25)

alignment

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secondary structure

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dotplot

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Window 6

Location 2,433,595 – 2,433,715
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 69.75
Mean single sequence MFE -26.73
Consensus MFE -18.86
Energy contribution -18.93
Covariance contribution 0.06
Combinations/Pair 1.22
Mean z-score -1.11
Structure conservation index 0.71
SVM decision value 0.17
SVM RNA-class probability 0.617155
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 2433595 120 + 5227293/0-120
AGUAUUUAUACAUGAAAUAGCAAUGUCUUUCCCACUUCCCUACGCUGGCAUUAACCAGAUCAGGUACUAAGAGUCUCAAAUUCCAAUUUGAUCUCAGCCUAUAAUAGGCCCCCCUAGUGG
.........((((.........)))).....(((((..(((...((((......))))...)))......(((..((((((....)))))).))).(((((...)))))......))))) ( -23.80)
>Bcere.0 2504742 120 + 5224283/0-120
AGUUUUUAUUUAUUAAAUAGCAAUGUCUUUCCCACUUCCCUACGCUGGCAUUAACCAGAUCAGGUACUAAGAGUCUCAAAUUCCAAUUUGAUCUCAGCCUAUAAUAGGCCCCCCUAGUGG
.(((((((.....)))).)))..........(((((..(((...((((......))))...)))......(((..((((((....)))))).))).(((((...)))))......))))) ( -24.30)
>Bclau.0 3474101 113 - 4303871/0-120
AGUUGCUUUACAUGAAUAAGCAAU-UGUUCUCCACUUCCCUACGCUGGUACAAGCCAGAUCAGGUUCAAAGGGUC-AAAGCAGCGCUUU--UCUCAGCC---AGAUGGCUCCCCUAGUGG
.((((((((((..((((((....)-))))).((.....(((...(((((....)))))...)))......)))).-))))))))(((..--....((((---....)))).....))).. ( -32.60)
>Bhalo.0 902234 114 + 4202352/0-120
GAUUAUCGUAAACUAGUUUUCACGAAAUGCGCCACUUCCCUUCGCUAGUAUGAACUAGAUCAGGUUCCAAGAGUU-GAGGAUUCGCCUC--UCUCAGUC---UUUCGACACCCCUAGUGG
...........(((((......(((((.((........(((...(((((....)))))...)))......(((..-((((.....))))--.))).)).---)))))......))))).. ( -26.20)
>consensus
AGUUUUUAUACAUGAAAUAGCAAUGUCUUCCCCACUUCCCUACGCUGGCAUUAACCAGAUCAGGUACUAAGAGUC_CAAAUUCCAAUUU__UCUCAGCC___AAUAGGCCCCCCUAGUGG
...............................(((((..(((...((((......))))...)))......(((...((((.....))))...))).((((.....))))......))))) (-18.86 = -18.93 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:19:26 2006