Locus 33

Sequence ID Bsubt.0
Location 4,153,752 – 4,153,799
Length 47
Max. P 0.997818
window170 window171

overview

Window 0

Location 4,153,752 – 4,153,799
Length 47
Sequences 3
Columns 49
Reading direction forward
Mean pairwise identity 52.74
Mean single sequence MFE -8.67
Consensus MFE -7.09
Energy contribution -7.10
Covariance contribution 0.01
Combinations/Pair 1.50
Mean z-score -1.17
Structure conservation index 0.82
SVM decision value 2.07
SVM RNA-class probability 0.987221
Prediction RNA
WARNING Sequence 1 too short.
WARNING Sequence 2 too short.
WARNING Sequence 3 too short.

Download alignment: ClustalW | MAF

>Bsubt.0 4153752 47 + 4214630
GUUUGCCUUUUUCCUAAAAGAAAAAACGCACCUAC--GAUUGCAGAUGC
((((((.((((((......)))))).((......)--)...)))))).. (  -6.90)
>Bhalo.0 4163129 48 + 4202352
GUUUUUAUUUUCCCUAAACGUGCAAAAACGCGUGCU-GAUCGCACGCGU
...........................((((((((.-....)))))))) ( -13.70)
>Blich.0 4187010 49 + 4222334
UUUCAUUGAUUUCAGCUAAAAGAAAACGCAUCUGCUUAAAAACAGACGC
.........((((........))))..((.((((........)))).)) (  -5.40)
>consensus
GUUUAUAUUUUUCCUAAAAGAGAAAACGCACCUGCU_GAUAGCAGACGC
...........................((((((((......)))))))) ( -7.09 =  -7.10 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 4,153,752 – 4,153,799
Length 47
Sequences 3
Columns 49
Reading direction reverse
Mean pairwise identity 52.74
Mean single sequence MFE -14.83
Consensus MFE -14.85
Energy contribution -12.63
Covariance contribution -2.21
Combinations/Pair 2.00
Mean z-score -3.03
Structure conservation index 1.00
SVM decision value 2.94
SVM RNA-class probability 0.997818
Prediction RNA
WARNING Sequence 1 too short.
WARNING Sequence 2 too short.
WARNING Sequence 3 too short.

Download alignment: ClustalW | MAF

>Bsubt.0 4153752 47 + 4214630
GCAUCUGCAAUC--GUAGGUGCGUUUUUUCUUUUAGGAAAAAGGCAAAC
((((((((....--))))))))(((((((((....))))))).)).... ( -16.00)
>Bhalo.0 4163129 48 + 4202352
ACGCGUGCGAUC-AGCACGCGUUUUUGCACGUUUAGGGAAAAUAAAAAC
..((((((....-.))))))((((((.(.......).))))))...... ( -14.60)
>Blich.0 4187010 49 + 4222334
GCGUCUGUUUUUAAGCAGAUGCGUUUUCUUUUAGCUGAAAUCAAUGAAA
(((((((((....)))))))))(.((((........)))).)....... ( -13.90)
>consensus
GCGUCUGCAAUC_AGCAGGUGCGUUUUCUCUUUUAGGAAAAAAAAAAAC
((((((((......))))))))........................... (-14.85 = -12.63 +  -2.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:17:49 2006