| Sequence ID | Bcere.0 |
|---|---|
| Location | 4,649,086 – 4,649,183 |
| Length | 97 |
| Max. P | 0.977201 |
| Location | 4,649,086 – 4,649,183 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.88 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -26.23 |
| Energy contribution | -25.02 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.977201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Bcere.0 4649086 97 + 5224283/9-129 AGCUACUG-------------------CGGAACAA----UUAUGGUGGGCCUAAAUGGACUCGAACCAUCGACCUCACGCUUAUCAGGCGUGCGCUCUAACCAGCUGAGCUAUAGGCCCA .((....)-------------------).......----......((((((((...((..((((....)))))).((((((.....)))))).((((.........))))..)))))))) ( -31.60) >Banth.0 4650107 97 + 5227293/9-129 AGCUACUG-------------------CGGAACAA----UUAUGGUGGGCCUAAAUGGACUCGAACCAUCGACCUCACGCUUAUCAGGCGUGCGCUCUAACCAGCUGAGCUAUAGGCCCA .((....)-------------------).......----......((((((((...((..((((....)))))).((((((.....)))))).((((.........))))..)))))))) ( -31.60) >Bsubt.0 3171113 100 + 4214630/9-129 AGCUACUG-------------------UGGAACAAA-AGUCAUGGUGGGCCUGAAUGGACUCGAACCAUCGACCUCACGCUUAUCAGGCGUGCGCUCUAACCAGCUGAGCUACAGGCCCA ....((((-------------------(((......-..)))))))(((((((...((..((((....)))))).((((((.....)))))).((((.........))))..))))))). ( -35.70) >Blich.0 3115662 96 + 4222334/9-129 AGCUACUG-------------------CGGAAUA-----UCAUGGUGGGCCUGAAUGGACUCGAACCAUCGACCUCACGCUUAUCAGGCGUGCGCUCUAACCAGCUGAGCUACAGGCCCA .((....)-------------------)......-----......((((((((...((..((((....)))))).((((((.....)))))).((((.........))))..)))))))) ( -33.40) >Bhalo.0 2710633 104 - 4202352/9-129 UAGCACAC----------------AUUCAUGCGGUAAAAAAGGAAUAGCGGCGGAGGGAAUCGAACCCCCGACCUCACGGGUAUGAACCGUACGCUCUAGCCAGCUGAGCUACACCGCCA ........----------------......(((((............(.(((((.(((.......)))))).)).)((((.......))))..((((.((....))))))...))))).. ( -30.90) >Bclau.0 2461546 120 - 4303871/9-129 CGCCACAACCGCCAUAAAAGCUUGAUUCGUUAUGUAUAGAUAUGGUAGCGGCGGAGGGGAUCGAACCCCCGACCUCACGGGUAUGAACCGUACGCUCUAGCCAGCUGAGCUACACCGCCA ..........((((((...((.(((....))).)).....))))))...(((((.((((.(((......)))))))((((.......))))..((((.((....))))))....))))). ( -35.40) >consensus AGCUACUG___________________CGGAACAA____UUAUGGUGGGCCUGAAUGGACUCGAACCAUCGACCUCACGCUUAUCAGGCGUGCGCUCUAACCAGCUGAGCUACAGGCCCA .............................................((((((((...((..(((......))))).(((((.......))))).((((.........))))..)))))))) (-26.23 = -25.02 + -1.22)
| Location | 4,649,086 – 4,649,183 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.88 |
| Mean single sequence MFE | -35.52 |
| Consensus MFE | -34.26 |
| Energy contribution | -30.27 |
| Covariance contribution | -3.99 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.952358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Bcere.0 4649086 97 + 5224283/9-129 UGGGCCUAUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGAUGGUUCGAGUCCAUUUAGGCCCACCAUAA----UUGUUCCG-------------------CAGUAGCU ((((((((...(((((((.(((((.((....))))))).))).))))...(((((.......))))))))))))).....(----(((.....-------------------)))).... ( -34.30) >Banth.0 4650107 97 + 5227293/9-129 UGGGCCUAUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGAUGGUUCGAGUCCAUUUAGGCCCACCAUAA----UUGUUCCG-------------------CAGUAGCU ((((((((...(((((((.(((((.((....))))))).))).))))...(((((.......))))))))))))).....(----(((.....-------------------)))).... ( -34.30) >Bsubt.0 3171113 100 + 4214630/9-129 UGGGCCUGUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGAUGGUUCGAGUCCAUUCAGGCCCACCAUGACU-UUUGUUCCA-------------------CAGUAGCU ((((((((...(((((((.(((((.((....))))))).))).))))...(((((.......)))))))))))))......((-.(((.....-------------------))).)).. ( -34.60) >Blich.0 3115662 96 + 4222334/9-129 UGGGCCUGUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGAUGGUUCGAGUCCAUUCAGGCCCACCAUGA-----UAUUCCG-------------------CAGUAGCU ((((((((...(((((((.(((((.((....))))))).))).))))...(((((.......)))))))))))))......-----......(-------------------(....)). ( -35.10) >Bhalo.0 2710633 104 - 4202352/9-129 UGGCGGUGUAGCUCAGCUGGCUAGAGCGUACGGUUCAUACCCGUGAGGUCGGGGGUUCGAUUCCCUCCGCCGCUAUUCCUUUUUUACCGCAUGAAU----------------GUGUGCUA (((((((((((((.....)))))((.(.(((((.......))))).).))(((((.......))))))))))))).............((((....----------------..)))).. ( -34.70) >Bclau.0 2461546 120 - 4303871/9-129 UGGCGGUGUAGCUCAGCUGGCUAGAGCGUACGGUUCAUACCCGUGAGGUCGGGGGUUCGAUCCCCUCCGCCGCUACCAUAUCUAUACAUAACGAAUCAAGCUUUUAUGGCGGUUGUGGCG .((.((.(((((((((....)).)))).)))((.((..((((.((....)).))))..)).)))).))(((((.(((...((..........)).....(((.....)))))).))))). ( -40.10) >consensus UGGGCCUGUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGAUGGUUCGAGUCCAUUCAGGCCCACCAUAA____UUGUUCCG___________________CAGUAGCU (((((((((((((.....)))))((.(.(((((.......))))).).))(((((.......)))))))))))))............................................. (-34.26 = -30.27 + -3.99)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:17:44 2006