Locus 24

Sequence ID Bsubt.0
Location 194,533 – 194,618
Length 85
Max. P 0.993369
window140 window141 window142 window143

overview

Window 0

Location 194,533 – 194,618
Length 85
Sequences 3
Columns 86
Reading direction forward
Mean pairwise identity 91.05
Mean single sequence MFE -29.90
Consensus MFE -30.12
Energy contribution -29.90
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.46
Structure conservation index 1.01
SVM decision value 2.39
SVM RNA-class probability 0.993369
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 194533 85 + 4214630
AUUGGGCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUCAUGCGUUGGUUCGAAUCCAGCUAGCCCAGUCAC-AGACACC
(((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))))...-....... ( -28.10)
>Bhalo.0 2952399 85 + 4202352
AUUGGGCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUGAUGCGCUGGUUCGAAUCCAGCUAGCCCAGUAAA-AAAAAAC
(((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))))...-....... ( -31.10)
>Blich.0 176970 86 + 4222334
AUUGGGCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUCAUGCGCUGGUUCGAAUCCAGCUAGCCCAGUUUUUGGACAUC
(((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))))........... ( -30.50)
>consensus
AUUGGGCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUCAUGCGCUGGUUCGAAUCCAGCUAGCCCAGUAAA_AGACAAC
(((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))))........... (-30.12 = -29.90 +  -0.22)

alignment

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secondary structure

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dotplot

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Window 1

Location 194,533 – 194,618
Length 85
Sequences 3
Columns 86
Reading direction reverse
Mean pairwise identity 91.05
Mean single sequence MFE -26.93
Consensus MFE -26.07
Energy contribution -26.73
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.97
SVM decision value 0.43
SVM RNA-class probability 0.734558
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 194533 85 + 4214630
GGUGUCU-GUGACUGGGCUAGCUGGAUUCGAACCAACGCAUGACGGAGUCAAAGUCCGUUGCCUUACCGCUUGGCUAUAGCCCAAU
...(((.-..)))((((((((((((.......)))..))..((((((.......))))))(((.........)))..))))))).. ( -24.00)
>Bhalo.0 2952399 85 + 4202352
GUUUUUU-UUUACUGGGCUAGCUGGAUUCGAACCAGCGCAUCACGGAGUCAAAGUCCGUUGCCUUACCGCUUGGCUAUAGCCCAAU
.......-.....((((((((((((.......))))).....(((((.......))))).(((.........)))..))))))).. ( -27.50)
>Blich.0 176970 86 + 4222334
GAUGUCCAAAAACUGGGCUAGCUGGAUUCGAACCAGCGCAUGACGGAGUCAAAGUCCGUUGCCUUACCGCUUGGCUAUAGCCCAAU
.............((((((((((((.......)))))....((((((.......))))))(((.........)))..))))))).. ( -29.30)
>consensus
GAUGUCU_AUAACUGGGCUAGCUGGAUUCGAACCAGCGCAUGACGGAGUCAAAGUCCGUUGCCUUACCGCUUGGCUAUAGCCCAAU
.............((((((((((((.......)))))....((((((.......))))))(((.........)))..))))))).. (-26.07 = -26.73 +   0.67)

alignment

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secondary structure

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dotplot

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Window 2

Location 194,533 – 194,618
Length 85
Sequences 3
Columns 86
Reading direction forward
Mean pairwise identity 91.05
Mean single sequence MFE -29.90
Consensus MFE -30.12
Energy contribution -29.90
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.46
Structure conservation index 1.01
SVM decision value 2.39
SVM RNA-class probability 0.993369
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 194533 85 + 4214630/0-86
AUUGGGCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUCAUGCGUUGGUUCGAAUCCAGCUAGCCCAGUCAC-AGACACC
(((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))))...-....... ( -28.10)
>Bhalo.0 2952399 85 + 4202352/0-86
AUUGGGCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUGAUGCGCUGGUUCGAAUCCAGCUAGCCCAGUAAA-AAAAAAC
(((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))))...-....... ( -31.10)
>Blich.0 176970 86 + 4222334/0-86
AUUGGGCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUCAUGCGCUGGUUCGAAUCCAGCUAGCCCAGUUUUUGGACAUC
(((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))))........... ( -30.50)
>consensus
AUUGGGCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUCAUGCGCUGGUUCGAAUCCAGCUAGCCCAGUAAA_AGACAAC
(((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))))........... (-30.12 = -29.90 +  -0.22)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 3

Location 194,533 – 194,618
Length 85
Sequences 3
Columns 86
Reading direction reverse
Mean pairwise identity 91.05
Mean single sequence MFE -26.93
Consensus MFE -26.07
Energy contribution -26.73
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.97
SVM decision value 0.43
SVM RNA-class probability 0.734558
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 194533 85 + 4214630/0-86
GGUGUCU-GUGACUGGGCUAGCUGGAUUCGAACCAACGCAUGACGGAGUCAAAGUCCGUUGCCUUACCGCUUGGCUAUAGCCCAAU
...(((.-..)))((((((((((((.......)))..))..((((((.......))))))(((.........)))..))))))).. ( -24.00)
>Bhalo.0 2952399 85 + 4202352/0-86
GUUUUUU-UUUACUGGGCUAGCUGGAUUCGAACCAGCGCAUCACGGAGUCAAAGUCCGUUGCCUUACCGCUUGGCUAUAGCCCAAU
.......-.....((((((((((((.......))))).....(((((.......))))).(((.........)))..))))))).. ( -27.50)
>Blich.0 176970 86 + 4222334/0-86
GAUGUCCAAAAACUGGGCUAGCUGGAUUCGAACCAGCGCAUGACGGAGUCAAAGUCCGUUGCCUUACCGCUUGGCUAUAGCCCAAU
.............((((((((((((.......)))))....((((((.......))))))(((.........)))..))))))).. ( -29.30)
>consensus
GAUGUCU_AUAACUGGGCUAGCUGGAUUCGAACCAGCGCAUGACGGAGUCAAAGUCCGUUGCCUUACCGCUUGGCUAUAGCCCAAU
.............((((((((((((.......)))))....((((((.......))))))(((.........)))..))))))).. (-26.07 = -26.73 +   0.67)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:17:21 2006