Locus 95

Sequence ID Bcere.0
Location 536,749 – 536,825
Length 76
Max. P 0.524295
window675

overview

Window 5

Location 536,749 – 536,825
Length 76
Sequences 2
Columns 76
Reading direction forward
Mean pairwise identity 97.37
Mean single sequence MFE -14.90
Consensus MFE -13.70
Energy contribution -13.70
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.92
SVM decision value -0.02
SVM RNA-class probability 0.524295
Prediction RNA

Download alignment: ClustalW | MAF

>Bcere.0 536749 76 + 5224283/0-76
ACAAUAAGCAAAAGAGCAGUUCGCAUCCAAAGCAUAAAACGAGUGGUAGUGCGAACGGUCAUAAUAGCUACCAUUA
......(((....((.(.(((((((((((...(.......)..)))..))))))))).))......)))....... ( -16.20)
>Banth.0 428752 76 + 5227293/0-76
ACAAUAAACAAAAGAGCAGUUCGCAUCCAAAGCAUAAAACGAGUGGUAGUGCGAACGGACAUAAUAGCUACCAUUA
..................(((((((((((...(.......)..)))..)))))))).................... ( -13.60)
>consensus
ACAAUAAACAAAAGAGCAGUUCGCAUCCAAAGCAUAAAACGAGUGGUAGUGCGAACGGACAUAAUAGCUACCAUUA
..................(((((((((((...(.......)..)))..))))))))((............)).... (-13.70 = -13.70 +   0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:24:25 2006