Locus 94

Sequence ID Banth.0
Location 258,435 – 258,535
Length 100
Max. P 0.993984
window671 window672 window673 window674

overview

Window 1

Location 258,435 – 258,535
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 67.71
Mean single sequence MFE -22.85
Consensus MFE -13.57
Energy contribution -13.82
Covariance contribution 0.25
Combinations/Pair 1.09
Mean z-score -1.95
Structure conservation index 0.59
SVM decision value 1.81
SVM RNA-class probability 0.978176
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 258435 100 + 5227293
CUUGCAAAAGAAAUUGAGAUUAUUUAUUAUUAUAAGUGUGUUAGCACUCGGGUGACUUGAGUGCUAAUAAAUAAAAUUUACAUAA----CAAAAUGAGGAGGUU
(((.(.....(((((.....(((((((....)))))))(((((((((((((....).)))))))))))).....))))).(((..----....))).).))).. ( -22.50)
>Bcere.0 292306 98 + 5224283
CUUGCAAAAGAAAUUGAGAUUAUUUAUUAUUAUAAGUGUGUUAGCACUCGAGUGACUUGAGUGCUAAUAAAAAAA--UUACAUAA----CAAAAUGAGGAGGUU
(((.(...............(((((((....)))))))((((((((((((((...))))))))))))))......--........----........).))).. ( -21.90)
>Bhalo.0 594652 102 + 4202352
CUUGCAAAAUAAGCAGGUUCUGAUUAUCAUUGUAACUGUGUUAGCACUCGUUUGAAGAGAGUGCUAACAAGGAAA-AUCUUAUAAG-CUCUAAAGGAGGGUGUU
.((((((.((((.(((...))).))))..))))))((.(((((((((((.........))))))))))).))...-.........(-((((.....)))))... ( -26.90)
>Bclau.0 956367 99 + 4303871
CUUGCAAAACAAGUGGGGAAUGAUUAUUAUAAUAAAUGUGUUAGCACUCAUCGAAUCCGAGUGCUAAUAAG-----ACUACAUACGUCUUCAAAGGAGGGUGUU
............((((.......((((....))))...(((((((((((.........)))))))))))..-----.))))..((..((((....))))..)). ( -22.80)
>Blich.0 626514 95 + 4222334
CUUGAAAUUGCCUGGGAGAUUCUUUAUUAUAAGAAUUGUGUUAGCACUCACCGAGUGCGAGUGCUAAAA--------UUACAUAUGAAAA-UAUUGAGGAGGUU
.....(((..(((.((.(((((((......)))))))((((((((((((.(.....).)))))))))..--------.))).........-..)).)))..))) ( -22.10)
>Bsubt.0 649347 96 + 4214630
CUUGAAAUUGGAAGGGAGAUUCUUUAUUAUAAGAAUUGUGUUAGCACUCUUUAGUGCUGAGUGCUAAAA--------UUACAUAUUCAUACUAUUGAGGAGGUU
...................(((((((.((((.(((((((((((((((((.........)))))))))..--------.)))).)))).)).)).)))))))... ( -20.90)
>consensus
CUUGCAAAAGAAAUGGAGAUUAUUUAUUAUAAUAAGUGUGUUAGCACUCGUCUGACCUGAGUGCUAAUAA_______UUACAUAAG__UCAAAAUGAGGAGGUU
......................................(((((((((((.........)))))))))))................................... (-13.57 = -13.82 +   0.25)

alignment

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secondary structure

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dotplot

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Window 2

Location 258,435 – 258,535
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 67.71
Mean single sequence MFE -17.96
Consensus MFE -11.70
Energy contribution -11.70
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.69
Structure conservation index 0.65
SVM decision value 2.44
SVM RNA-class probability 0.993984
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 258435 100 + 5227293
AACCUCCUCAUUUUG----UUAUGUAAAUUUUAUUUAUUAGCACUCAAGUCACCCGAGUGCUAACACACUUAUAAUAAUAAAUAAUCUCAAUUUCUUUUGCAAG
...............----...((((((.........(((((((((.........))))))))).....((((....))))...............)))))).. ( -14.20)
>Bcere.0 292306 98 + 5224283
AACCUCCUCAUUUUG----UUAUGUAA--UUUUUUUAUUAGCACUCAAGUCACUCGAGUGCUAACACACUUAUAAUAAUAAAUAAUCUCAAUUUCUUUUGCAAG
...........((((----((((....--........(((((((((.((...)).)))))))))..........))))))))...................... ( -14.95)
>Bhalo.0 594652 102 + 4202352
AACACCCUCCUUUAGAG-CUUAUAAGAU-UUUCCUUGUUAGCACUCUCUUCAAACGAGUGCUAACACAGUUACAAUGAUAAUCAGAACCUGCUUAUUUUGCAAG
................(-(..(((((..-......(((((((((((.........)))))))))))(((......((.....))....))))))))...))... ( -22.40)
>Bclau.0 956367 99 + 4303871
AACACCCUCCUUUGAAGACGUAUGUAGU-----CUUAUUAGCACUCGGAUUCGAUGAGUGCUAACACAUUUAUUAUAAUAAUCAUUCCCCACUUGUUUUGCAAG
..............(((((.......))-----))).((((((((((.......))))))))))...........................((((.....)))) ( -19.90)
>Blich.0 626514 95 + 4222334
AACCUCCUCAAUA-UUUUCAUAUGUAA--------UUUUAGCACUCGCACUCGGUGAGUGCUAACACAAUUCUUAUAAUAAAGAAUCUCCCAGGCAAUUUCAAG
..(((........-.............--------..(((((((((((.....)))))))))))....((((((......)))))).....))).......... ( -20.40)
>Bsubt.0 649347 96 + 4214630
AACCUCCUCAAUAGUAUGAAUAUGUAA--------UUUUAGCACUCAGCACUAAAGAGUGCUAACACAAUUCUUAUAAUAAAGAAUCUCCCUUCCAAUUUCAAG
................((((..((...--------..(((((((((.........)))))))))....((((((......))))))........))..)))).. ( -15.90)
>consensus
AACCUCCUCAUUUGGA__CUUAUGUAA_______UUAUUAGCACUCAAAUCAAACGAGUGCUAACACAAUUAUAAUAAUAAACAAUCUCCAUUUCUUUUGCAAG
.....................................(((((((((.........)))))))))........................................ (-11.70 = -11.70 +   0.00)

alignment

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secondary structure

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dotplot

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Window 3

Location 258,435 – 258,535
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 67.71
Mean single sequence MFE -22.85
Consensus MFE -13.57
Energy contribution -13.82
Covariance contribution 0.25
Combinations/Pair 1.09
Mean z-score -1.95
Structure conservation index 0.59
SVM decision value 1.81
SVM RNA-class probability 0.978176
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 258435 100 + 5227293/0-104
CUUGCAAAAGAAAUUGAGAUUAUUUAUUAUUAUAAGUGUGUUAGCACUCGGGUGACUUGAGUGCUAAUAAAUAAAAUUUACAUAA----CAAAAUGAGGAGGUU
(((.(.....(((((.....(((((((....)))))))(((((((((((((....).)))))))))))).....))))).(((..----....))).).))).. ( -22.50)
>Bcere.0 292306 98 + 5224283/0-104
CUUGCAAAAGAAAUUGAGAUUAUUUAUUAUUAUAAGUGUGUUAGCACUCGAGUGACUUGAGUGCUAAUAAAAAAA--UUACAUAA----CAAAAUGAGGAGGUU
(((.(...............(((((((....)))))))((((((((((((((...))))))))))))))......--........----........).))).. ( -21.90)
>Bhalo.0 594652 102 + 4202352/0-104
CUUGCAAAAUAAGCAGGUUCUGAUUAUCAUUGUAACUGUGUUAGCACUCGUUUGAAGAGAGUGCUAACAAGGAAA-AUCUUAUAAG-CUCUAAAGGAGGGUGUU
.((((((.((((.(((...))).))))..))))))((.(((((((((((.........))))))))))).))...-.........(-((((.....)))))... ( -26.90)
>Bclau.0 956367 99 + 4303871/0-104
CUUGCAAAACAAGUGGGGAAUGAUUAUUAUAAUAAAUGUGUUAGCACUCAUCGAAUCCGAGUGCUAAUAAG-----ACUACAUACGUCUUCAAAGGAGGGUGUU
............((((.......((((....))))...(((((((((((.........)))))))))))..-----.))))..((..((((....))))..)). ( -22.80)
>Blich.0 626514 95 + 4222334/0-104
CUUGAAAUUGCCUGGGAGAUUCUUUAUUAUAAGAAUUGUGUUAGCACUCACCGAGUGCGAGUGCUAAAA--------UUACAUAUGAAAA-UAUUGAGGAGGUU
.....(((..(((.((.(((((((......)))))))((((((((((((.(.....).)))))))))..--------.))).........-..)).)))..))) ( -22.10)
>Bsubt.0 649347 96 + 4214630/0-104
CUUGAAAUUGGAAGGGAGAUUCUUUAUUAUAAGAAUUGUGUUAGCACUCUUUAGUGCUGAGUGCUAAAA--------UUACAUAUUCAUACUAUUGAGGAGGUU
...................(((((((.((((.(((((((((((((((((.........)))))))))..--------.)))).)))).)).)).)))))))... ( -20.90)
>consensus
CUUGCAAAAGAAAUGGAGAUUAUUUAUUAUAAUAAGUGUGUUAGCACUCGUCUGACCUGAGUGCUAAUAA_______UUACAUAAG__UCAAAAUGAGGAGGUU
......................................(((((((((((.........)))))))))))................................... (-13.57 = -13.82 +   0.25)

alignment

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secondary structure

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dotplot

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Window 4

Location 258,435 – 258,535
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 67.71
Mean single sequence MFE -17.96
Consensus MFE -11.70
Energy contribution -11.70
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.69
Structure conservation index 0.65
SVM decision value 2.44
SVM RNA-class probability 0.993984
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 258435 100 + 5227293/0-104
AACCUCCUCAUUUUG----UUAUGUAAAUUUUAUUUAUUAGCACUCAAGUCACCCGAGUGCUAACACACUUAUAAUAAUAAAUAAUCUCAAUUUCUUUUGCAAG
...............----...((((((.........(((((((((.........))))))))).....((((....))))...............)))))).. ( -14.20)
>Bcere.0 292306 98 + 5224283/0-104
AACCUCCUCAUUUUG----UUAUGUAA--UUUUUUUAUUAGCACUCAAGUCACUCGAGUGCUAACACACUUAUAAUAAUAAAUAAUCUCAAUUUCUUUUGCAAG
...........((((----((((....--........(((((((((.((...)).)))))))))..........))))))))...................... ( -14.95)
>Bhalo.0 594652 102 + 4202352/0-104
AACACCCUCCUUUAGAG-CUUAUAAGAU-UUUCCUUGUUAGCACUCUCUUCAAACGAGUGCUAACACAGUUACAAUGAUAAUCAGAACCUGCUUAUUUUGCAAG
................(-(..(((((..-......(((((((((((.........)))))))))))(((......((.....))....))))))))...))... ( -22.40)
>Bclau.0 956367 99 + 4303871/0-104
AACACCCUCCUUUGAAGACGUAUGUAGU-----CUUAUUAGCACUCGGAUUCGAUGAGUGCUAACACAUUUAUUAUAAUAAUCAUUCCCCACUUGUUUUGCAAG
..............(((((.......))-----))).((((((((((.......))))))))))...........................((((.....)))) ( -19.90)
>Blich.0 626514 95 + 4222334/0-104
AACCUCCUCAAUA-UUUUCAUAUGUAA--------UUUUAGCACUCGCACUCGGUGAGUGCUAACACAAUUCUUAUAAUAAAGAAUCUCCCAGGCAAUUUCAAG
..(((........-.............--------..(((((((((((.....)))))))))))....((((((......)))))).....))).......... ( -20.40)
>Bsubt.0 649347 96 + 4214630/0-104
AACCUCCUCAAUAGUAUGAAUAUGUAA--------UUUUAGCACUCAGCACUAAAGAGUGCUAACACAAUUCUUAUAAUAAAGAAUCUCCCUUCCAAUUUCAAG
................((((..((...--------..(((((((((.........)))))))))....((((((......))))))........))..)))).. ( -15.90)
>consensus
AACCUCCUCAUUUGGA__CUUAUGUAA_______UUAUUAGCACUCAAAUCAAACGAGUGCUAACACAAUUAUAAUAAUAAACAAUCUCCAUUUCUUUUGCAAG
.....................................(((((((((.........)))))))))........................................ (-11.70 = -11.70 +   0.00)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:24:25 2006