Locus 93

Sequence ID	Blich.0
Location	672,764 – 672,879
Length	115
Max. P	0.993763

overview

Window 9

Location	672,764 – 672,879
Length	115
Sequences	4
Columns	120
Reading direction	reverse
Mean pairwise identity	68.36
Mean single sequence MFE	-38.30
Consensus MFE	-17.15
Energy contribution	-16.15
Covariance contribution	-1.00
Combinations/Pair	1.42
Mean z-score	-2.77
Structure conservation index	0.45
SVM decision value	2.31
SVM RNA-class probability	0.992199
Prediction	RNA

Download alignment: ClustalW | MAF

>Blich.0 672764 115 + 4222334/0-120
AGAACGGGAAGCCGUUACCGGAAAUUGAGCGGAAGAU----GAAGGUCUUCAAUCAGGGUGGUACCGCGUGCAUUUGAGCCACGUCCCUUAUCGGGAUGAG-GUUCUUUUUUUAUACAAA
..........((((((((((....((((...((((((----....))))))..))))..)))))..))).))....(((((.((((((.....)))))).)-)))).............. ( -36.20)
>Bsubt.0 268465 111 - 4214630/0-120
AGAACGGGAAACCGUUAUUCGAA--UGAGCGGAAGAC-----AAUGUCUUCAACCAGGGUGGUACCGCGUGCA-UUGAGCCACGUCCCUUAUUGGGAUGGG-CUCUUUUUUGUGUUUGUA
..(((((....))))).....((--((.(((((((((-----...)))))).(((.....)))..)))...))-))(((((.((((((.....))))))))-)))............... ( -44.50)
>Bcere.0 4439240 116 + 5224283/0-120
ACGGUGCUAAGCCGUUAUGUAAA-UAAGGUGGUAGGC-UUUUUUGGUCUGCAACUAGGGUGGUAACGCGAUGAUCAAAAUC--GUCCCUUAUUUGAAGGGGCGAUUUUUUUAUGUUUUUA
(((((.....)))))........-...(((.((((((-(.....))))))).)))...(((....))).((((..((((((--(((((((.....))))))))))))).))))....... ( -36.20)
>Banth.0 4462178 117 + 5227293/0-120
ACGGUGCUAAGCCGUUAUGUAAA-UAAGGUGGUAGGCUUUUUUUGGUCUGCAACUAGGGUGGUAACGCGAUAAUCAAAAUC--GUCCCUUAUUUGAAGGGGCGAUUUUUUUAUGUUUUUA
(((((.....)))))........-...(((.(((((((......))))))).)))...(((....))).((((..((((((--(((((((.....))))))))))))).))))....... ( -36.30)
>consensus
ACAACGCGAAGCCGUUAUGUAAA_UAAAGCGGAAGAC____UAAGGUCUGCAACCAGGGUGGUAACGCGAGCAUCAAAACC__GUCCCUUAUUGGAAGGGG_GAUUUUUUUAUGUUUUUA
..(((((....)))))(((((((.....(((((((((........)))))).(((.....)))..)))...............(((((((.....)))))))......)))))))..... (-17.15 = -16.15 +  -1.00)

alignment

secondary structure

dotplot

Window 0

Location	672,764 – 672,879
Length	115
Sequences	4
Columns	120
Reading direction	reverse
Mean pairwise identity	68.50
Mean single sequence MFE	-40.67
Consensus MFE	-17.05
Energy contribution	-16.18
Covariance contribution	-0.87
Combinations/Pair	1.42
Mean z-score	-3.17
Structure conservation index	0.42
SVM decision value	2.42
SVM RNA-class probability	0.993763
Prediction	RNA

Download alignment: ClustalW | MAF

>Blich.0 672764 115 + 4222334/7-127
GUAGCAAAGAACGGGAAGCCGUUACCGGAAAUUGAGCGGAAGAU----GAAGGUCUUCAAUCAGGGUGGUACCGCGUGCAUUUGAGCCACGUCCCUUAUCGGGAUGAG-GUUCUUUUUUU
(((((....(((((....)))))((((....((((...((((((----....))))))..))))..))))...)).)))....(((((.((((((.....)))))).)-))))....... ( -40.40)
>Bsubt.0 268465 111 - 4214630/7-127
GUAGCAAAGAACGGGAAACCGUUAUUCGAA--UGAGCGGAAGAC-----AAUGUCUUCAACCAGGGUGGUACCGCGUGCA-UUGAGCCACGUCCCUUAUUGGGAUGGG-CUCUUUUUUGU
...(((((((((((....))))).....((--((.(((((((((-----...)))))).(((.....)))..)))...))-))(((((.((((((.....))))))))-)))..)))))) ( -46.80)
>Bcere.0 4439240 116 + 5224283/7-127
GGAAGAGACGGUGCUAAGCCGUUAUGUAAA-UAAGGUGGUAGGC-UUUUUUGGUCUGCAACUAGGGUGGUAACGCGAUGAUCAAAAUC--GUCCCUUAUUUGAAGGGGCGAUUUUUUUAU
......((((((.....)))))).......-...(((.((((((-(.....))))))).)))...(((....))).((((..((((((--(((((((.....))))))))))))).)))) ( -37.70)
>Banth.0 4462178 117 + 5227293/7-127
GGAAGAGACGGUGCUAAGCCGUUAUGUAAA-UAAGGUGGUAGGCUUUUUUUGGUCUGCAACUAGGGUGGUAACGCGAUAAUCAAAAUC--GUCCCUUAUUUGAAGGGGCGAUUUUUUUAU
......((((((.....)))))).......-...(((.(((((((......))))))).)))...(((....))).((((..((((((--(((((((.....))))))))))))).)))) ( -37.80)
>consensus
GGAACAAACAACGCGAAGCCGUUAUGUAAA_UAAAGCGGAAGAC____UAAGGUCUGCAACCAGGGUGGUAACGCGAGCAUCAAAACC__GUCCCUUAUUGGAAGGGG_GAUUUUUUUAU
.........(((((....)))))............(((((((((........)))))).(((.....)))..)))...............(((((((.....)))))))........... (-17.05 = -16.18 +  -0.87)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:24:22 2006