Locus 90

Sequence ID Banth.0
Location 250,997 – 251,083
Length 86
Max. P 0.998750
window590 window591 window592 window593

overview

Window 0

Location 250,997 – 251,083
Length 86
Sequences 6
Columns 88
Reading direction forward
Mean pairwise identity 90.52
Mean single sequence MFE -32.07
Consensus MFE -32.94
Energy contribution -31.83
Covariance contribution -1.11
Combinations/Pair 1.15
Mean z-score -1.68
Structure conservation index 1.03
SVM decision value 3.21
SVM RNA-class probability 0.998750
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 250997 86 + 5227293
AUAUCAUCGCGGGGUGGAGCAGCACGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGUCCCCGCAA--CCAAA
........((((((.(((..(((...(..(((..(((((.......))))).)))..)..)))....)))...))))))..--..... ( -31.40)
>Blich.0 616915 86 + 4222334
AUAUUAUCGCGGGGUGGAGCAGUUCGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGCCCCCGCAA--CCAAA
........((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..--..... ( -33.00)
>Bcere.0 284387 86 + 5224283
AUAUCAUCGCGGGGUGGAGCAGCACGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGUCCCCGCAA--CCAAA
........((((((.(((..(((...(..(((..(((((.......))))).)))..)..)))....)))...))))))..--..... ( -31.40)
>Bsubt.0 639807 86 + 4214630
UUAUCAUCGCGGGGUGGAGCAGUUCGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGCCCCCGCAA--CCAAA
........((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..--..... ( -33.00)
>Bhalo.0 577372 88 + 4202352
AUAACGACGCGGGGUGGAGCAGUCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGGCGGUUCAAAUCCGUCCCCCGCAAUACCAAA
........((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))......... ( -31.80)
>Bclau.0 943800 88 + 4303871
AGAGCGACGCGGGGUGGAGCAGUCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGGCGGUUCAAAUCCGUCCCCCGCAAUACCAAA
........((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))......... ( -31.80)
>consensus
AUAUCAUCGCGGGGUGGAGCAGUACGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGCCCCCGCAA__CCAAA
........((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))......... (-32.94 = -31.83 +  -1.11)

alignment

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secondary structure

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dotplot

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Window 1

Location 250,997 – 251,083
Length 86
Sequences 6
Columns 88
Reading direction reverse
Mean pairwise identity 90.52
Mean single sequence MFE -34.82
Consensus MFE -31.94
Energy contribution -32.17
Covariance contribution 0.22
Combinations/Pair 1.05
Mean z-score -2.03
Structure conservation index 0.92
SVM decision value 2.08
SVM RNA-class probability 0.987462
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 250997 86 + 5227293
UUUGG--UUGCGGGGACAGGAUUUGAACCUGCGACCUUCGGGUUAUGAGCCCGACGAGCUACCGUGCUGCUCCACCCCGCGAUGAUAU
..(.(--((((((((.((((.......))))......((((((.....)))))).((((.........))))..))))))))).)... ( -34.40)
>Blich.0 616915 86 + 4222334
UUUGG--UUGCGGGGGCAGGAUUUGAACCUGCGACCUUCGGGUUAUGAGCCCGACGAGCUACCGAACUGCUCCACCCCGCGAUAAUAU
....(--(((((((((((((.......))))).....((((((.....)))))).((((.........))))..)))))))))..... ( -38.70)
>Bcere.0 284387 86 + 5224283
UUUGG--UUGCGGGGACAGGAUUUGAACCUGCGACCUUCGGGUUAUGAGCCCGACGAGCUACCGUGCUGCUCCACCCCGCGAUGAUAU
..(.(--((((((((.((((.......))))......((((((.....)))))).((((.........))))..))))))))).)... ( -34.40)
>Bsubt.0 639807 86 + 4214630
UUUGG--UUGCGGGGGCAGGAUUUGAACCUGCGACCUUCGGGUUAUGAGCCCGACGAGCUACCGAACUGCUCCACCCCGCGAUGAUAA
..(.(--(((((((((((((.......))))).....((((((.....)))))).((((.........))))..))))))))).)... ( -38.80)
>Bhalo.0 577372 88 + 4202352
UUUGGUAUUGCGGGGGACGGAUUUGAACCGCCGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGACUGCUCCACCCCGCGUCGUUAU
.........(((((((.(((.......))).).....((((((.....)))))).((((.........))))..))))))........ ( -30.10)
>Bclau.0 943800 88 + 4303871
UUUGGUAUUGCGGGGGACGGAUUUGAACCGCCGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGACUGCUCCACCCCGCGUCGCUCU
...(((..((((((((.(((.......))).).....((((((.....)))))).((((.........))))..)))))))..))).. ( -32.50)
>consensus
UUUGG__UUGCGGGGGCAGGAUUUGAACCUGCGACCUUCGGGUUAUGAGCCCGACGAGCUACCGAACUGCUCCACCCCGCGAUGAUAU
........((((((((((((.......))))).....((((((.....)))))).((((.........))))..)))))))....... (-31.94 = -32.17 +   0.22)

alignment

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secondary structure

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dotplot

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Window 2

Location 250,997 – 251,083
Length 86
Sequences 6
Columns 88
Reading direction forward
Mean pairwise identity 90.52
Mean single sequence MFE -32.07
Consensus MFE -32.94
Energy contribution -31.83
Covariance contribution -1.11
Combinations/Pair 1.15
Mean z-score -1.68
Structure conservation index 1.03
SVM decision value 3.21
SVM RNA-class probability 0.998750
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 250997 86 + 5227293/0-88
AUAUCAUCGCGGGGUGGAGCAGCACGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGUCCCCGCAA--CCAAA
........((((((.(((..(((...(..(((..(((((.......))))).)))..)..)))....)))...))))))..--..... ( -31.40)
>Blich.0 616915 86 + 4222334/0-88
AUAUUAUCGCGGGGUGGAGCAGUUCGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGCCCCCGCAA--CCAAA
........((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..--..... ( -33.00)
>Bcere.0 284387 86 + 5224283/0-88
AUAUCAUCGCGGGGUGGAGCAGCACGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGUCCCCGCAA--CCAAA
........((((((.(((..(((...(..(((..(((((.......))))).)))..)..)))....)))...))))))..--..... ( -31.40)
>Bsubt.0 639807 86 + 4214630/0-88
UUAUCAUCGCGGGGUGGAGCAGUUCGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGCCCCCGCAA--CCAAA
........((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..--..... ( -33.00)
>Bhalo.0 577372 88 + 4202352/0-88
AUAACGACGCGGGGUGGAGCAGUCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGGCGGUUCAAAUCCGUCCCCCGCAAUACCAAA
........((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))......... ( -31.80)
>Bclau.0 943800 88 + 4303871/0-88
AGAGCGACGCGGGGUGGAGCAGUCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGGCGGUUCAAAUCCGUCCCCCGCAAUACCAAA
........((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))......... ( -31.80)
>consensus
AUAUCAUCGCGGGGUGGAGCAGUACGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGCCCCCGCAA__CCAAA
........((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))......... (-32.94 = -31.83 +  -1.11)

alignment

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secondary structure

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dotplot

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Window 3

Location 250,997 – 251,083
Length 86
Sequences 6
Columns 88
Reading direction reverse
Mean pairwise identity 90.52
Mean single sequence MFE -34.82
Consensus MFE -31.94
Energy contribution -32.17
Covariance contribution 0.22
Combinations/Pair 1.05
Mean z-score -2.03
Structure conservation index 0.92
SVM decision value 2.08
SVM RNA-class probability 0.987462
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 250997 86 + 5227293/0-88
UUUGG--UUGCGGGGACAGGAUUUGAACCUGCGACCUUCGGGUUAUGAGCCCGACGAGCUACCGUGCUGCUCCACCCCGCGAUGAUAU
..(.(--((((((((.((((.......))))......((((((.....)))))).((((.........))))..))))))))).)... ( -34.40)
>Blich.0 616915 86 + 4222334/0-88
UUUGG--UUGCGGGGGCAGGAUUUGAACCUGCGACCUUCGGGUUAUGAGCCCGACGAGCUACCGAACUGCUCCACCCCGCGAUAAUAU
....(--(((((((((((((.......))))).....((((((.....)))))).((((.........))))..)))))))))..... ( -38.70)
>Bcere.0 284387 86 + 5224283/0-88
UUUGG--UUGCGGGGACAGGAUUUGAACCUGCGACCUUCGGGUUAUGAGCCCGACGAGCUACCGUGCUGCUCCACCCCGCGAUGAUAU
..(.(--((((((((.((((.......))))......((((((.....)))))).((((.........))))..))))))))).)... ( -34.40)
>Bsubt.0 639807 86 + 4214630/0-88
UUUGG--UUGCGGGGGCAGGAUUUGAACCUGCGACCUUCGGGUUAUGAGCCCGACGAGCUACCGAACUGCUCCACCCCGCGAUGAUAA
..(.(--(((((((((((((.......))))).....((((((.....)))))).((((.........))))..))))))))).)... ( -38.80)
>Bhalo.0 577372 88 + 4202352/0-88
UUUGGUAUUGCGGGGGACGGAUUUGAACCGCCGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGACUGCUCCACCCCGCGUCGUUAU
.........(((((((.(((.......))).).....((((((.....)))))).((((.........))))..))))))........ ( -30.10)
>Bclau.0 943800 88 + 4303871/0-88
UUUGGUAUUGCGGGGGACGGAUUUGAACCGCCGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGACUGCUCCACCCCGCGUCGCUCU
...(((..((((((((.(((.......))).).....((((((.....)))))).((((.........))))..)))))))..))).. ( -32.50)
>consensus
UUUGG__UUGCGGGGGCAGGAUUUGAACCUGCGACCUUCGGGUUAUGAGCCCGACGAGCUACCGAACUGCUCCACCCCGCGAUGAUAU
........((((((((((((.......))))).....((((((.....)))))).((((.........))))..)))))))....... (-31.94 = -32.17 +   0.22)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:23:21 2006