Locus 9

Sequence ID Banth.0
Location 4,651,085 – 4,651,163
Length 78
Max. P 0.633421
window24 window25

overview

Window 4

Location 4,651,085 – 4,651,163
Length 78
Sequences 4
Columns 78
Reading direction forward
Mean pairwise identity 96.58
Mean single sequence MFE -31.57
Consensus MFE -31.16
Energy contribution -31.23
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.50
Structure conservation index 0.99
SVM decision value 0.21
SVM RNA-class probability 0.633421
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 4651085 78 + 5227293
AAGUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAGGCAGGCGCUCUCCCAGCUGAGCUAAGGCCCCAU
..((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))) ( -31.60)
>Bcere.0 4650063 78 + 5224283
AAGUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAGGCAGGCGCUCUCCCAGCUGAGCUAAGGCCCCAU
..((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))) ( -31.60)
>Bhalo.0 2949474 77 + 4202352
G-GUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGGCCCCAU
.-((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))) ( -32.30)
>Bclau.0 2627848 78 + 4303871
AAGUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGGCCCCGA
...(((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).))). ( -30.80)
>consensus
AAGUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGGCCCCAU
..((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))) (-31.16 = -31.23 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 4,651,085 – 4,651,163
Length 78
Sequences 4
Columns 78
Reading direction forward
Mean pairwise identity 96.58
Mean single sequence MFE -31.57
Consensus MFE -31.16
Energy contribution -31.23
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.50
Structure conservation index 0.99
SVM decision value 0.21
SVM RNA-class probability 0.633421
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 4651085 78 + 5227293/0-78
AAGUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAGGCAGGCGCUCUCCCAGCUGAGCUAAGGCCCCAU
..((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))) ( -31.60)
>Bcere.0 4650063 78 + 5224283/0-78
AAGUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAGGCAGGCGCUCUCCCAGCUGAGCUAAGGCCCCAU
..((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))) ( -31.60)
>Bhalo.0 2949474 77 + 4202352/0-78
G-GUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGGCCCCAU
.-((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))) ( -32.30)
>Bclau.0 2627848 78 + 4303871/0-78
AAGUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGGCCCCGA
...(((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).))). ( -30.80)
>consensus
AAGUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGGCCCCAU
..((((.(((((((((.......))))).....(((((.......))))).((((........))))..)))).)))) (-31.16 = -31.23 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:15:11 2006