Locus 86

Sequence ID Blich.0
Location 412 – 495
Length 83
Max. P 0.935552
window506 window507

overview

Window 6

Location 412 – 495
Length 83
Sequences 4
Columns 84
Reading direction forward
Mean pairwise identity 56.66
Mean single sequence MFE -20.48
Consensus MFE -8.24
Energy contribution -7.55
Covariance contribution -0.69
Combinations/Pair 1.58
Mean z-score -2.37
Structure conservation index 0.40
SVM decision value 1.25
SVM RNA-class probability 0.935552
Prediction RNA

Download alignment: ClustalW | MAF

>Blich.0 412 83 + 4222334
UUAACGAAUG-GACUCAUCCAUUUGCUCUUUUUUUGUGUUCUAUAACAGGUUGGACAAGCAAAUAUUGCUGGUAAAGGAGGGAC
....((((((-((....))))))))(((((((((..(((((...........)))))((((.....))))...))))))))).. ( -20.10)
>Bsubt.0 318 81 + 4214630
UGUACGAAUG-GUAAGCGCCAUUUGCUCUUUUUUUGUGUUCUAUAACAGA--GAAAGACGCCAUUUUCUAAGAAAAGGAGGGAC
....((((((-((....)))))))).(((((((((((........)))))--))))))(.((.(((((...))))))).).... ( -21.40)
>Bcere.0 319 84 + 5224283
CGUAUAAAUAUACAUUUUAUAUUUAUUUAGGUUGUACAUUUGUUGCGCAACCUUAUUCUUUUACCAUCUUAGUAAAGGAGGGAC
...(((((((((.....)))))))))..((((((..((.....))..))))))..(((((((((.......))))))))).... ( -20.00)
>Banth.0 318 84 + 5227293
CGUAUAAAUAUACAUUUUAUAUUUAUUCAGGUUGUACAUUUGUUGCACAACCUUAUUCUUUUACCAUCUUAGUAAAGGAGGGAC
.(.(((((((((.....))))))))).)(((((((.((.....)).)))))))..(((((((((.......))))))))).... ( -20.40)
>consensus
CGUACAAAUA_ACAUUUUACAUUUACUCAGGUUGUACAUUCGAUAACAAACCGUAUUAUUUUACCAUCUUAGUAAAGGAGGGAC
....((((((((.....))))))))...(((((((.((.....)).)))))))..........(((((((.....))))))).. ( -8.24 =  -7.55 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 412 – 495
Length 83
Sequences 4
Columns 84
Reading direction forward
Mean pairwise identity 56.66
Mean single sequence MFE -20.48
Consensus MFE -8.24
Energy contribution -7.55
Covariance contribution -0.69
Combinations/Pair 1.58
Mean z-score -2.37
Structure conservation index 0.40
SVM decision value 1.25
SVM RNA-class probability 0.935552
Prediction RNA

Download alignment: ClustalW | MAF

>Blich.0 412 83 + 4222334/0-84
UUAACGAAUG-GACUCAUCCAUUUGCUCUUUUUUUGUGUUCUAUAACAGGUUGGACAAGCAAAUAUUGCUGGUAAAGGAGGGAC
....((((((-((....))))))))(((((((((..(((((...........)))))((((.....))))...))))))))).. ( -20.10)
>Bsubt.0 318 81 + 4214630/0-84
UGUACGAAUG-GUAAGCGCCAUUUGCUCUUUUUUUGUGUUCUAUAACAGA--GAAAGACGCCAUUUUCUAAGAAAAGGAGGGAC
....((((((-((....)))))))).(((((((((((........)))))--))))))(.((.(((((...))))))).).... ( -21.40)
>Bcere.0 319 84 + 5224283/0-84
CGUAUAAAUAUACAUUUUAUAUUUAUUUAGGUUGUACAUUUGUUGCGCAACCUUAUUCUUUUACCAUCUUAGUAAAGGAGGGAC
...(((((((((.....)))))))))..((((((..((.....))..))))))..(((((((((.......))))))))).... ( -20.00)
>Banth.0 318 84 + 5227293/0-84
CGUAUAAAUAUACAUUUUAUAUUUAUUCAGGUUGUACAUUUGUUGCACAACCUUAUUCUUUUACCAUCUUAGUAAAGGAGGGAC
.(.(((((((((.....))))))))).)(((((((.((.....)).)))))))..(((((((((.......))))))))).... ( -20.40)
>consensus
CGUACAAAUA_ACAUUUUACAUUUACUCAGGUUGUACAUUCGAUAACAAACCGUAUUAUUUUACCAUCUUAGUAAAGGAGGGAC
....((((((((.....))))))))...(((((((.((.....)).)))))))..........(((((((.....))))))).. ( -8.24 =  -7.55 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:22:12 2006