Locus 83

Sequence ID Banth.0
Location 20,067 – 20,186
Length 119
Max. P 0.997437
window493 window494 window495 window496 window497

overview

Window 3

Location 20,067 – 20,186
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 60.58
Mean single sequence MFE -20.74
Consensus MFE -13.68
Energy contribution -9.44
Covariance contribution -4.24
Combinations/Pair 1.91
Mean z-score -1.24
Structure conservation index 0.66
SVM decision value 0.31
SVM RNA-class probability 0.683660
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 20067 119 + 5227293/0-120
UCAUAAAGAUAUUCCACAUU-CCAUUCCAGGAUGGAUUCACAAACUGUUUCUAUCGAUUUCCACCAACCAUCGACUCUCUAUAAGAAACGACAUUUGUUACUACUUCCUAUCAACACGCU
.......((((........(-(((((....))))))...(((((.(((((((.(((((...........))))).........)))))))...)))))..........))))........ ( -15.60)
>Bcere.0 20069 119 + 5224283/0-120
UCAUAAAGAUAUUCCACAUU-CCAUUCCAGGAUGGAUUCACAAACUGUUUCUAUCGAUUUCCACCAACCAUCGACUCUCUAUAAGAAACGACAUUUGUUACUAUUUCCUAUCAACACGCU
.......((((........(-(((((....))))))...(((((.(((((((.(((((...........))))).........)))))))...)))))..........))))........ ( -15.60)
>Bhalo.0 34410 110 + 4202352/0-120
---------UGUUCAGCAUU-CCACUCAAGGAUGGAUUCAUAGGCACCUCUGGCUAGUUCGCACCGUCCACUAGCUCUCUGAACAGAAGUAUUCCUAUUACUAGUUCCUCUCAACGCAUU
---------(((((((....-...((...((((((...((.((....)).))((......)).))))))...))....)))))))..((((.......)))).................. ( -19.80)
>Bsubt.0 1110217 115 - 4214630/0-120
C-----GGCUUUUCACCGCUGCAACUCUGAGGUGAGUUCGGAAACAAACUUGAUUGACUUUCACCAGCCGUCAACUCUCUGCAACAAUAUCUGUUUCUUACUGCUCCUCUUCAUUGUUCU
(-----(((........)))).(((..(((((.((((..(((((((....(((.......)))...((.(........).)).........)))))))....))))..)))))..))).. ( -21.60)
>Blich.0 1161739 115 - 4222334/0-120
C-----AGCUUAUCACUGCUGCAACUCUGAGGCGAGUUCGGAAGCUCAUUUGAUUGACUUUCACCAGCCGUCAACUCUCUGAAACAAAAUGGGCUUCUUACUGCUCCUCUUCACUGUUCU
(-----(((........)))).(((..(((((.((((..(((((((((((((((((((...........))))).)).........))))))))))))....))))..)))))..))).. ( -31.10)
>consensus
C_____AGAUAUUCAACAUU_CCACUCCAGGAUGGAUUCACAAACUCAUUUGAUUGAUUUCCACCAACCAUCAACUCUCUGAAACAAAAUACAUUUCUUACUACUUCCUAUCAACGCGCU
............................((((.(.....(((((.(((((((.(((((...........))))).........)))))))...))))).....).))))........... (-13.68 =  -9.44 +  -4.24)

alignment

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secondary structure

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dotplot

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Window 4

Location 20,067 – 20,186
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 58.23
Mean single sequence MFE -39.66
Consensus MFE -14.80
Energy contribution -14.20
Covariance contribution -0.60
Combinations/Pair 1.78
Mean z-score -2.44
Structure conservation index 0.37
SVM decision value 1.36
SVM RNA-class probability 0.946015
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 20067 119 + 5227293/80-200
UGAAUCCAUCCUGGAAUGG-AAUGUGGAAUAUCUUUAUGAUUAGUAAACAUUCCCGGUGAAGAGCCGUUAUUUCUACUUGAGAGGAAGGCGGUAAUGCUUUCAACUAGGGUGGCAACGCG
.....(((((((((...((-(((((..(..(((.....)))...)..)))))))((((.....))))...((((.....)))).(((((((....)))))))..)))))))))....... ( -37.00)
>Bcere.0 20069 119 + 5224283/80-200
UGAAUCCAUCCUGGAAUGG-AAUGUGGAAUAUCUUUAUGAUUAGUAAACAUUCCCGGUGAAGAGCCGUUAUUUCUACUUGAGAGGAAAGCGGUAAUGCUUUCAACUAGGGUGGCAACGCG
.....(((((((((...((-(((((..(..(((.....)))...)..)))))))((((.....))))...((((.....)))).(((((((....)))))))..)))))))))....... ( -37.30)
>Bhalo.0 34410 107 + 4202352/80-200
UGAAUCCAUCCUUGAGUGG-AAUGCUGAACA---------UAAGUAGGCGUUUCCGGUUCUG-GCCGUUAU--CCAGAUGAGUGGUCAGCGGUAUAGCUGGCAACAAGGGUGGCAACGCG
.....(((((((((...((-((((((..((.---------...)).))))))))(((((...-((((((..--(((......)))..))))))..)))))....)))))))))....... ( -38.60)
>Bsubt.0 1110217 105 - 4214630/80-200
CGAACUCACCUCAGAGUUGCAGCGGUGAAAAGCC-----GCUGACGCAUAACUGCGUUAAAA-----GUAU---CAAGUGAGUG--CGGCGUAUGCCGCGCUAACGAGGGUGGUACCGCG
........((((...(.(((((((((.....)))-----)))((((((....))))))....-----))).---)..((.((((--((((....)))))))).))))))(((....))). ( -43.90)
>Blich.0 1161739 104 - 4222334/80-200
CGAACUCGCCUCAGAGUUGCAGCAGUGAUAAGCU-----GCUGCCGCGUAUCUGCGUUACAG-----AUAU---CAAGUGAGUG--UGCCGCGUGC-ACACUAACAAGGGUGGUACCGCG
..(((((......)))))((((((((.....)))-----)))))((((((((((.....)))-----))))---...((.((((--(((.....))-))))).))..((......))))) ( -41.50)
>consensus
UGAAUCCAUCCUAGAGUGG_AAUGGUGAAAAGCU_____AUUAGUAAACAUUUCCGGUAAAG_GCCGUUAU__CCAAGUGAGUGG_AGGCGGUAACGCUGCCAACAAGGGUGGCAACGCG
.....(((((((((.((....)).............................................................(((((((....)))))))..)))))))))....... (-14.80 = -14.20 +  -0.60)

alignment

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secondary structure

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dotplot

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Window 5

Location 20,067 – 20,179
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 60.58
Mean single sequence MFE -43.50
Consensus MFE -19.46
Energy contribution -20.54
Covariance contribution 1.08
Combinations/Pair 1.50
Mean z-score -3.13
Structure conservation index 0.45
SVM decision value 2.78
SVM RNA-class probability 0.997009
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 20067 112 + 5227293/120-240
UUAGUAAACAUUCCCGGUGAAGAGCCGUUAUUUCUACUUGAGAGGAAGGCGGUAAUGCUUUCAACUAGGGUGGCAACGCGGGUUAA-------CUCCCGUCCCUUUA-UAUAGGGACGGG
............((((((.....)))(((....(((((..((..(((((((....)))))))..))..))))).)))..)))....-------..(((((((((...-...))))))))) ( -41.50)
>Bcere.0 20069 112 + 5224283/120-240
UUAGUAAACAUUCCCGGUGAAGAGCCGUUAUUUCUACUUGAGAGGAAAGCGGUAAUGCUUUCAACUAGGGUGGCAACGCGGGUUAA-------CUCCCGUCCCUUUA-UAUAGGGACGGG
............((((((.....)))(((....(((((..((..(((((((....)))))))..))..))))).)))..)))....-------..(((((((((...-...))))))))) ( -41.80)
>Bhalo.0 34410 108 + 4202352/120-240
UAAGUAGGCGUUUCCGGUUCUG-GCCGUUAU--CCAGAUGAGUGGUCAGCGGUAUAGCUGGCAACAAGGGUGGCAACGCGGGU--G-------CUCUCGUCCCUUUUCUUUAGGGAUGAG
......((((((.((((((...-((((((..--(((......)))..))))))..)))))).)))....(((....)))....--)-------))(((((((((.......))))))))) ( -42.50)
>Bsubt.0 1110217 108 - 4214630/120-240
CUGACGCAUAACUGCGUUAAAA-----GUAU---CAAGUGAGUG--CGGCGUAUGCCGCGCUAACGAGGGUGGUACCGCGGGAAAACGAAAGUCUCUCGUCCCUUUU-U-GGGAUGAGGG
.(((((((....)))))))...-----((((---((.((.((((--((((....)))))))).)).....)))))).........((....))((((((((((....-.-)))))))))) ( -47.10)
>Blich.0 1161739 101 - 4222334/120-240
CUGCCGCGUAUCUGCGUUACAG-----AUAU---CAAGUGAGUG--UGCCGCGUGC-ACACUAACAAGGGUGGUACCGCGGGAAA-------UCUCUCGUCCCUUCU-UAGGGAUGGGAG
...(((((((((((.....)))-----))))---...((.((((--(((.....))-))))).))..((......))))))....-------.(((((((((((...-.))))))))))) ( -44.60)
>consensus
UUAGUAAACAUUUCCGGUAAAG_GCCGUUAU__CCAAGUGAGUGG_AGGCGGUAACGCUGCCAACAAGGGUGGCAACGCGGGUAAA_______CUCUCGUCCCUUUU_UAUAGGGACGGG
............(((..........................((.(((((((....))))))).))....(((....)))))).............(((((((((.......))))))))) (-19.46 = -20.54 +   1.08)

alignment

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secondary structure

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dotplot

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Window 6

Location 20,067 – 20,179
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 64.53
Mean single sequence MFE -47.80
Consensus MFE -24.46
Energy contribution -25.54
Covariance contribution 1.08
Combinations/Pair 1.46
Mean z-score -4.79
Structure conservation index 0.51
SVM decision value 2.86
SVM RNA-class probability 0.997437
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 20067 112 + 5227293/128-248
CAUUCCCGGUGAAGAGCCGUUAUUUCUACUUGAGAGGAAGGCGGUAAUGCUUUCAACUAGGGUGGCAACGCGGGUUAA-------CUCCCGUCCCUUUA-UAUAGGGACGGGAGUUUUUU
....((((((.....)))(((....(((((..((..(((((((....)))))))..))..))))).)))..)))..((-------(((((((((((...-...))))))))))))).... ( -48.80)
>Bcere.0 20069 112 + 5224283/128-248
CAUUCCCGGUGAAGAGCCGUUAUUUCUACUUGAGAGGAAAGCGGUAAUGCUUUCAACUAGGGUGGCAACGCGGGUUAA-------CUCCCGUCCCUUUA-UAUAGGGACGGGAGUUUUUU
....((((((.....)))(((....(((((..((..(((((((....)))))))..))..))))).)))..)))..((-------(((((((((((...-...))))))))))))).... ( -49.10)
>Bhalo.0 34410 108 + 4202352/128-248
CGUUUCCGGUUCUG-GCCGUUAU--CCAGAUGAGUGGUCAGCGGUAUAGCUGGCAACAAGGGUGGCAACGCGGGU--G-------CUCUCGUCCCUUUUCUUUAGGGAUGAGAGCUUUUU
.(((.((((((...-((((((..--(((......)))..))))))..)))))).)))....(((....)))....--(-------(((((((((((.......))))))))))))..... ( -49.00)
>Bsubt.0 1110217 108 - 4214630/128-248
UAACUGCGUUAAAA-----GUAU---CAAGUGAGUG--CGGCGUAUGCCGCGCUAACGAGGGUGGUACCGCGGGAAAACGAAAGUCUCUCGUCCCUUUU-U-GGGAUGAGGGAGUUUUUU
...(((((......-----((((---((.((.((((--((((....)))))))).)).....)))))))))))......((((.(((((((((((....-.-))))))))))).)))).. ( -49.30)
>Blich.0 1161739 101 - 4222334/128-248
UAUCUGCGUUACAG-----AUAU---CAAGUGAGUG--UGCCGCGUGC-ACACUAACAAGGGUGGUACCGCGGGAAA-------UCUCUCGUCCCUUCU-UAGGGAUGGGAGAGUUUUUU
..((((((.(((..-----.(((---(..((.((((--(((.....))-))))).))...))))))).))))))...-------((((((((((((...-.))))))))))))....... ( -42.80)
>consensus
CAUUUCCGGUAAAG_GCCGUUAU__CCAAGUGAGUGG_AGGCGGUAACGCUGCCAACAAGGGUGGCAACGCGGGUAAA_______CUCUCGUCCCUUUU_UAUAGGGACGGGAGUUUUUU
....(((..........................((.(((((((....))))))).))....(((....))))))...........(((((((((((.......)))))))))))...... (-24.46 = -25.54 +   1.08)

alignment

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secondary structure

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dotplot

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Window 7

Location 20,067 – 20,179
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 64.53
Mean single sequence MFE -36.12
Consensus MFE -10.52
Energy contribution -10.96
Covariance contribution 0.44
Combinations/Pair 1.43
Mean z-score -3.74
Structure conservation index 0.29
SVM decision value 2.46
SVM RNA-class probability 0.994274
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 20067 112 + 5227293/128-248
AAAAAACUCCCGUCCCUAUA-UAAAGGGACGGGAG-------UUAACCCGCGUUGCCACCCUAGUUGAAAGCAUUACCGCCUUCCUCUCAAGUAGAAAUAACGGCUCUUCACCGGGAAUG
....(((((((((((((...-...)))))))))))-------))..((((.((.(((.....((..(((.((......)).)))..))....((....))..))).....)))))).... ( -40.60)
>Bcere.0 20069 112 + 5224283/128-248
AAAAAACUCCCGUCCCUAUA-UAAAGGGACGGGAG-------UUAACCCGCGUUGCCACCCUAGUUGAAAGCAUUACCGCUUUCCUCUCAAGUAGAAAUAACGGCUCUUCACCGGGAAUG
....(((((((((((((...-...)))))))))))-------))..((((.((.(((.....((..((((((......))))))..))....((....))..))).....)))))).... ( -44.70)
>Bhalo.0 34410 108 + 4202352/128-248
AAAAAGCUCUCAUCCCUAAAGAAAAGGGACGAGAG-------C--ACCCGCGUUGCCACCCUUGUUGCCAGCUAUACCGCUGACCACUCAUCUGG--AUAACGGC-CAGAACCGGAAACG
.....((((((.(((((.......))))).)))))-------)--..(((.((((((...........((((......)))).(((......)))--.....)))-...))))))..... ( -35.80)
>Bsubt.0 1110217 108 - 4214630/128-248
AAAAAACUCCCUCAUCCC-A-AAAAGGGACGAGAGACUUUCGUUUUCCCGCGGUACCACCCUCGUUAGCGCGGCAUACGCCG--CACUCACUUG---AUAC-----UUUUAACGCAGUUA
....(((((.(((.((((-.-....)))).))).)).............(((...........((.((.(((((....))))--).)).))(((---(...-----..))))))).))). ( -27.60)
>Blich.0 1161739 101 - 4222334/128-248
AAAAAACUCUCCCAUCCCUA-AGAAGGGACGAGAGA-------UUUCCCGCGGUACCACCCUUGUUAGUGU-GCACGCGGCA--CACUCACUUG---AUAU-----CUGUAACGCAGAUA
......(((((...(((((.-...))))).))))).-------....(((((((((.((........))))-)).)))))..--..........---.(((-----(((.....)))))) ( -31.90)
>consensus
AAAAAACUCCCGUCCCUAUA_AAAAGGGACGAGAG_______UUAACCCGCGUUGCCACCCUAGUUGAAAGCACUACCGCCG_CCACUCAAGUGG__AUAACGGC_CUUCACCGGAAAUG
......(((((.(((((.......))))).))))).................................((((......))))...................................... (-10.52 = -10.96 +   0.44)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:22:04 2006