Locus 81

Sequence ID Bcere.0
Location 1,972,993 – 1,973,101
Length 108
Max. P 0.985446
window456 window457

overview

Window 6

Location 1,972,993 – 1,973,101
Length 108
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 73.57
Mean single sequence MFE -21.71
Consensus MFE -15.65
Energy contribution -15.33
Covariance contribution -0.32
Combinations/Pair 1.32
Mean z-score -1.73
Structure conservation index 0.72
SVM decision value 2.01
SVM RNA-class probability 0.985446
Prediction RNA

Download alignment: ClustalW | MAF

>Bcere.0 1972993 108 - 5224283
CUCUUUUCAAUCGUAAUUCUCGAUUGAUUUCAUCGAAAUAAUCCUCUUUGUCUAUUGAUAUUUAUAUUGUAUGAUAAAGAG---CAUCGACAAACAAUAU-AAUGGAGGUAU
((((..(((((((.......))))))).....((((.......(((((((((...(((((....)))))...)))))))))---..))))..........-...)))).... ( -22.20)
>Banth.0 1977626 109 - 5227293
CUCUUUUCAAUCGAAAUUUUCGAUUGAUCUUAUCAAAAUAAUCCUCUUUGUCUAUUGAUAUUUAUAUUGUAUGAUAAAGAG---CAUCGACAAACAAUAUAAAUGGAGGUAU
......((((((((.....))))))))...............(((((..(((....)))(((((((((((.((........---......)).))))))))))))))))... ( -23.04)
>Bsubt.0 3722359 111 + 4214630
CCUUUCUAAAUCGGUUUUAGCGAUUGGAUUAAUCGAAAUAAUCAUCUGUAUUGAUUGAUGAAUCCAUUAUAUGAUGAAGAAAAUCAUUCGUAAACAA-AGGAGCAGAUGCAU
(((((...(((((.......)))))(((((.(((((.....(((.......)))))))).)))))....((((((((......))).)))))...))-))).((....)).. ( -19.90)
>consensus
CUCUUUUCAAUCGAAAUUAUCGAUUGAUUUAAUCGAAAUAAUCCUCUUUGUCUAUUGAUAUUUAUAUUGUAUGAUAAAGAG___CAUCGACAAACAAUAU_AAUGGAGGUAU
((((..(((((((.......)))))))................(((((((((...(((((....)))))...))))))))).......................)))).... (-15.65 = -15.33 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 1,972,993 – 1,973,101
Length 108
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 73.57
Mean single sequence MFE -21.71
Consensus MFE -15.65
Energy contribution -15.33
Covariance contribution -0.32
Combinations/Pair 1.32
Mean z-score -1.73
Structure conservation index 0.72
SVM decision value 2.01
SVM RNA-class probability 0.985446
Prediction RNA

Download alignment: ClustalW | MAF

>Bcere.0 1972993 108 - 5224283/0-112
CUCUUUUCAAUCGUAAUUCUCGAUUGAUUUCAUCGAAAUAAUCCUCUUUGUCUAUUGAUAUUUAUAUUGUAUGAUAAAGAG---CAUCGACAAACAAUAU-AAUGGAGGUAU
((((..(((((((.......))))))).....((((.......(((((((((...(((((....)))))...)))))))))---..))))..........-...)))).... ( -22.20)
>Banth.0 1977626 109 - 5227293/0-112
CUCUUUUCAAUCGAAAUUUUCGAUUGAUCUUAUCAAAAUAAUCCUCUUUGUCUAUUGAUAUUUAUAUUGUAUGAUAAAGAG---CAUCGACAAACAAUAUAAAUGGAGGUAU
......((((((((.....))))))))...............(((((..(((....)))(((((((((((.((........---......)).))))))))))))))))... ( -23.04)
>Bsubt.0 3722359 111 + 4214630/0-112
CCUUUCUAAAUCGGUUUUAGCGAUUGGAUUAAUCGAAAUAAUCAUCUGUAUUGAUUGAUGAAUCCAUUAUAUGAUGAAGAAAAUCAUUCGUAAACAA-AGGAGCAGAUGCAU
(((((...(((((.......)))))(((((.(((((.....(((.......)))))))).)))))....((((((((......))).)))))...))-))).((....)).. ( -19.90)
>consensus
CUCUUUUCAAUCGAAAUUAUCGAUUGAUUUAAUCGAAAUAAUCCUCUUUGUCUAUUGAUAUUUAUAUUGUAUGAUAAAGAG___CAUCGACAAACAAUAU_AAUGGAGGUAU
((((..(((((((.......)))))))................(((((((((...(((((....)))))...))))))))).......................)))).... (-15.65 = -15.33 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:21:33 2006