Locus 79

Sequence ID	Banth.0
Location	245,259 – 245,379
Length	120
Max. P	0.963257

overview

Window 7

Location	245,259 – 245,379
Length	120
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	85.56
Mean single sequence MFE	-37.41
Consensus MFE	-35.59
Energy contribution	-34.49
Covariance contribution	-1.10
Combinations/Pair	1.16
Mean z-score	-1.42
Structure conservation index	0.95
SVM decision value	1.02
SVM RNA-class probability	0.900993
Prediction	RNA

Download alignment: ClustalW | MAF

>Banth.0 245259 120 + 5227293/0-120
ACUUCGGAGGAUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGGGUCGGCGGUUCGAUCCCGUCAUCCUCCACCAUAAUAUUAUAAUGAAAAGUAAAAUGAUAUUAAUGUAAAG
.....(((((((..((((........))))..((((.......))))((((((((....))))))))...)))))))....(((((((((.............)))))))))........ ( -37.02)
>Bcere.0 278654 120 + 5224283/0-120
ACUUCGGAGGAUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGGGUCGGCGGUUCGAUCCCGUCAUCCUCCACCAUAAUAUUAUAAUGAAAAGUAAAAUGACAUUAAUGUAAAG
.....(((((((..((((........))))..((((.......))))((((((((....))))))))...)))))))............(((((.............)))))........ ( -33.92)
>Bhalo.0 558270 120 + 4202352/0-120
CAUUCGGAGGAUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGGGUCGGCGGUUCGAUCCCGUCAUCCUCCACCAUUUUAUUGGUCCGGUAGUUCAGUUGGUUAGAAUGCCUGC
((((((((((((..((((........))))..((((.......))))((((((((....))))))))...)))))))((((......))))((((........))))...)))))..... ( -41.30)
>consensus
ACUUCGGAGGAUUAGCUCAGCUGGGAGAGCACCUGCCUUACAAGCAGGGGGUCGGCGGUUCGAUCCCGUCAUCCUCCACCAUAAUAUUAUAAUGAAAAGUAAAAUGAUAUUAAUGUAAAG
.....(((((((..((((........))))..((((.......))))((((((((....))))))))...)))))))....(((((((((.............)))))))))........ (-35.59 = -34.49 +  -1.10)

alignment

secondary structure

dotplot

Window 8

Location	245,259 – 245,379
Length	120
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	85.56
Mean single sequence MFE	-37.10
Consensus MFE	-33.40
Energy contribution	-33.40
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.94
Structure conservation index	0.90
SVM decision value	1.05
SVM RNA-class probability	0.906982
Prediction	RNA

Download alignment: ClustalW | MAF

>Banth.0 245259 120 + 5227293/0-120
CUUUACAUUAAUAUCAUUUUACUUUUCAUUAUAAUAUUAUGGUGGAGGAUGACGGGAUCGAACCGCCGACCCCCUGCUUGUAAGGCAGGUGCUCUCCCAGCUGAGCUAAUCCUCCGAAGU
.......................((((((((((....))))))(((((((...(((.(((......))))))((((((.....)))))).((((........))))..))))))))))). ( -35.30)
>Bcere.0 278654 120 + 5224283/0-120
CUUUACAUUAAUGUCAUUUUACUUUUCAUUAUAAUAUUAUGGUGGAGGAUGACGGGAUCGAACCGCCGACCCCCUGCUUGUAAGGCAGGUGCUCUCCCAGCUGAGCUAAUCCUCCGAAGU
.......................((((((((((....))))))(((((((...(((.(((......))))))((((((.....)))))).((((........))))..))))))))))). ( -35.30)
>Bhalo.0 558270 120 + 4202352/0-120
GCAGGCAUUCUAACCAACUGAACUACCGGACCAAUAAAAUGGUGGAGGAUGACGGGAUCGAACCGCCGACCCCCUGCUUGUAAGGCAGGUGCUCUCCCAGCUGAGCUAAUCCUCCGAAUG
.....(((((.......(((......)))((((......))))(((((((...(((.(((......))))))((((((.....)))))).((((........))))..)))))))))))) ( -40.70)
>consensus
CUUUACAUUAAUAUCAUUUUACUUUUCAUUAUAAUAUUAUGGUGGAGGAUGACGGGAUCGAACCGCCGACCCCCUGCUUGUAAGGCAGGUGCUCUCCCAGCUGAGCUAAUCCUCCGAAGU
..........................................((((((((...(((.(((......))))))((((((.....)))))).((((........))))..)))))))).... (-33.40 = -33.40 +  -0.00)

alignment

secondary structure

dotplot

Window 9

Location	245,259 – 245,374
Length	115
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	69.58
Mean single sequence MFE	-40.27
Consensus MFE	-24.82
Energy contribution	-22.83
Covariance contribution	-1.99
Combinations/Pair	1.28
Mean z-score	-1.49
Structure conservation index	0.62
SVM decision value	1.00
SVM RNA-class probability	0.897918
Prediction	RNA

Download alignment: ClustalW | MAF

>Banth.0 245259 115 + 5227293/320-440
CGGUAAGGCAACGGACUUU---GACUCCGUCAUGCGCUGGUUCGAAUCCAGCUAGCCCAGCCAUUUACGA-GCCAUUAGCUCAGUUGG-UAGAGCAUCUGACUUUUAAUCAGAGGGUCGA
.(((..(((.(((((....---...))))).....(((((.......)))))..)))..))).....(((-.((....((((......-..)))).(((((.......))))))).))). ( -39.90)
>Bcere.0 278654 115 + 5224283/320-440
CGGUAAGGCAACGGACUUU---GACUCCGUCAUGCGCUGGUUCGAAUCCAGCUAGCCCAGCCAUUUACGA-GCCAUUAGCUCAGUUGG-UAGAGCAUCUGACUUUUAAUCAGAGGGUCGA
.(((..(((.(((((....---...))))).....(((((.......)))))..)))..))).....(((-.((....((((......-..)))).(((((.......))))))).))). ( -39.90)
>Bhalo.0 558270 120 + 4202352/320-440
CGCUAGGUUGAGGGCCUAGUGGGGGUUGACCCCGUGGAGGUUCGAGUCCUCUCAACCGCAUCGUAUAAAGCGCCCGUAGCUCAAUUGGAUAGAGCGUUUGACUACGGAUCAAAAGGUUAG
((((((((.....))))))))((((....))))..(((((.......))))).((((((..........))..((((((.((((.((.......)).)))))))))).......)))).. ( -41.00)
>consensus
CGGUAAGGCAACGGACUUU___GACUCCGUCAUGCGCUGGUUCGAAUCCAGCUAGCCCAGCCAUUUACGA_GCCAUUAGCUCAGUUGG_UAGAGCAUCUGACUUUUAAUCAGAGGGUCGA
.(((..(((.............((.....))....(((((.......)))))..)))..))).........(((....((((.........)))).(((((.......))))).)))... (-24.82 = -22.83 +  -1.99)

alignment

secondary structure

dotplot

Window 0

Location	245,259 – 245,374
Length	115
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	69.58
Mean single sequence MFE	-37.61
Consensus MFE	-23.20
Energy contribution	-23.77
Covariance contribution	0.57
Combinations/Pair	1.23
Mean z-score	-1.63
Structure conservation index	0.62
SVM decision value	1.55
SVM RNA-class probability	0.963257
Prediction	RNA

Download alignment: ClustalW | MAF

>Banth.0 245259 115 + 5227293/320-440
UCGACCCUCUGAUUAAAAGUCAGAUGCUCUA-CCAACUGAGCUAAUGGC-UCGUAAAUGGCUGGGCUAGCUGGAUUCGAACCAGCGCAUGACGGAGUC---AAAGUCCGUUGCCUUACCG
.(((.((((((((.....)))))).((((..-......))))....)).-))).....((..((((..(((((.......)))))....((((((...---....))))))))))..)). ( -39.10)
>Bcere.0 278654 115 + 5224283/320-440
UCGACCCUCUGAUUAAAAGUCAGAUGCUCUA-CCAACUGAGCUAAUGGC-UCGUAAAUGGCUGGGCUAGCUGGAUUCGAACCAGCGCAUGACGGAGUC---AAAGUCCGUUGCCUUACCG
.(((.((((((((.....)))))).((((..-......))))....)).-))).....((..((((..(((((.......)))))....((((((...---....))))))))))..)). ( -39.10)
>Bhalo.0 558270 120 + 4202352/320-440
CUAACCUUUUGAUCCGUAGUCAAACGCUCUAUCCAAUUGAGCUACGGGCGCUUUAUACGAUGCGGUUGAGAGGACUCGAACCUCCACGGGGUCAACCCCCACUAGGCCCUCAACCUAGCG
.............((((((((((.............)))).))))))((((..........))(((((((.((.......(((....((((....))))....))))))))))))..)). ( -34.63)
>consensus
UCGACCCUCUGAUUAAAAGUCAGAUGCUCUA_CCAACUGAGCUAAUGGC_UCGUAAAUGGCUGGGCUAGCUGGAUUCGAACCAGCGCAUGACGGAGUC___AAAGUCCGUUGCCUUACCG
....((.((((((.....)))))).((((.........))))....)).........(((..((((..(((((.......)))))....((((((.(......).))))))))))..))) (-23.20 = -23.77 +   0.57)

alignment

secondary structure

dotplot

Window 1

Location	245,259 – 245,377
Length	118
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	71.79
Mean single sequence MFE	-33.07
Consensus MFE	-24.66
Energy contribution	-21.67
Covariance contribution	-2.99
Combinations/Pair	1.33
Mean z-score	-1.27
Structure conservation index	0.75
SVM decision value	1.07
SVM RNA-class probability	0.910778
Prediction	RNA

Download alignment: ClustalW | MAF

>Banth.0 245259 118 + 5227293/360-480
GCGAAAAAAAACAAAAGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUA-CCAACUGAGCUAAUGGC-UCGUAAAUGGCUGGGCUAGCUGGAUUCGAA
.((((.............((((((((((((.......))))).....((((((.....)))))).((((..-......))))..)))))-))......(((((...)))))...)))).. ( -34.10)
>Bcere.0 278654 117 + 5224283/360-480
GCG-GAAAAAACAAAAGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUA-CCAACUGAGCUAAUGGC-UCGUAAAUGGCUGGGCUAGCUGGAUUCGAA
.((-((............((((((((((((.......))))).....((((((.....)))))).((((..-......))))..)))))-))......(((((...)))))...)))).. ( -33.60)
>Bhalo.0 558270 116 + 4202352/360-480
ACUCAAAACA----UGGCGCGCCCGAGAGGAGUCGAACCCCUAACCUUUUGAUCCGUAGUCAAACGCUCUAUCCAAUUGAGCUACGGGCGCUUUAUACGAUGCGGUUGAGAGGACUCGAA
.(((((..((----(.(.(((((((...(((.(((((..........))))))))..........((((.........))))..)))))))......).)))...))))).......... ( -31.50)
>consensus
GCG_AAAAAAACAAAAGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUA_CCAACUGAGCUAAUGGC_UCGUAAAUGGCUGGGCUAGCUGGAUUCGAA
....................((((((((((.......))))).....((((((.....)))))).((((.........))))..)))))........((((...))))............ (-24.66 = -21.67 +  -2.99)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:21:28 2006