Locus 75

Sequence ID Banth.0
Location 245,164 – 245,259
Length 95
Max. P 0.613113
window423 window424

overview

Window 3

Location 245,164 – 245,259
Length 95
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 82.44
Mean single sequence MFE -32.34
Consensus MFE -30.46
Energy contribution -30.46
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.94
SVM decision value 0.16
SVM RNA-class probability 0.613113
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 245164 95 + 5227293
UUCUUCUCUGCCAUU-------CAUAU---------------UGGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCACC
...............-------.....---------------((((((((..(((..........)))((((((.......))))))...(((((.......))))))))))))).. ( -31.00)
>Bcere.0 278559 95 + 5224283
UUCUUCUCUGCCAUU-------CAUAU---------------UGGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCACC
...............-------.....---------------((((((((..(((..........)))((((((.......))))))...(((((.......))))))))))))).. ( -31.00)
>Bhalo.0 558173 97 + 4202352
UCCUUCUCCGCCAUUUU-----CAAAA---------------UGGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAUC
.................-----....(---------------((((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))))). ( -31.80)
>Blich.0 572412 115 + 4222334
UCCUUCUCCGCCAUUAGGAA--AAUAUGAUGCUGACUUCAUAUGGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAUU
......(((.......))).--.((((((........))))))(((((((..(((..........)))((((((.......))))))...(((((.......))))))))))))... ( -36.80)
>Bsubt.0 528421 116 + 4214630
UCCUUCUCCGCCAUAAGAUUUCGAUAUAA-GUUCUCAACCAUCGGCCCGUUGGUCAAGCGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAUU
(((....(((((.................-.............((((....))))..(((((......)))))........)))))....(((((.......)))))..)))..... ( -31.10)
>consensus
UCCUUCUCCGCCAUU_______CAUAU_______________UGGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAUC
...........................................(((((((..(((..........)))((((((.......))))))...(((((.......))))))))))))... (-30.46 = -30.46 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 245,164 – 245,259
Length 95
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 82.44
Mean single sequence MFE -32.34
Consensus MFE -30.46
Energy contribution -30.46
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.94
SVM decision value 0.16
SVM RNA-class probability 0.613113
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 245164 95 + 5227293/0-117
UUCUUCUCUGCCAUU-------CAUAU---------------UGGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCACC
...............-------.....---------------((((((((..(((..........)))((((((.......))))))...(((((.......))))))))))))).. ( -31.00)
>Bcere.0 278559 95 + 5224283/0-117
UUCUUCUCUGCCAUU-------CAUAU---------------UGGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCACC
...............-------.....---------------((((((((..(((..........)))((((((.......))))))...(((((.......))))))))))))).. ( -31.00)
>Bhalo.0 558173 97 + 4202352/0-117
UCCUUCUCCGCCAUUUU-----CAAAA---------------UGGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAUC
.................-----....(---------------((((((((..(((..........)))((((((.......))))))...(((((.......)))))))))))))). ( -31.80)
>Blich.0 572412 115 + 4222334/0-117
UCCUUCUCCGCCAUUAGGAA--AAUAUGAUGCUGACUUCAUAUGGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAUU
......(((.......))).--.((((((........))))))(((((((..(((..........)))((((((.......))))))...(((((.......))))))))))))... ( -36.80)
>Bsubt.0 528421 116 + 4214630/0-117
UCCUUCUCCGCCAUAAGAUUUCGAUAUAA-GUUCUCAACCAUCGGCCCGUUGGUCAAGCGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAUU
(((....(((((.................-.............((((....))))..(((((......)))))........)))))....(((((.......)))))..)))..... ( -31.10)
>consensus
UCCUUCUCCGCCAUU_______CAUAU_______________UGGCCCGUUGGUCAAGUGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAAUCCCGUACGGGUCAUC
...........................................(((((((..(((..........)))((((((.......))))))...(((((.......))))))))))))... (-30.46 = -30.46 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:21:09 2006