Locus 72

Sequence ID Blich.0
Location 3,178,989 – 3,179,047
Length 58
Max. P 0.857512
window415 window416

overview

Window 5

Location 3,178,989 – 3,179,047
Length 58
Sequences 3
Columns 61
Reading direction forward
Mean pairwise identity 77.22
Mean single sequence MFE -21.30
Consensus MFE -10.62
Energy contribution -11.40
Covariance contribution 0.78
Combinations/Pair 1.24
Mean z-score -2.94
Structure conservation index 0.50
SVM decision value 0.81
SVM RNA-class probability 0.857512
Prediction RNA

Download alignment: ClustalW | MAF

>Blich.0 3178989 58 + 4222334
ACAACGAAUGCGAGGGUUUGUCGACACGCUGAAAC-UCCGGCU--UUUGCCGGAGUUUUUU
.........(((...(((....))).))).(((((-((((((.--...))))))))))).. ( -21.80)
>Bsubt.0 3106218 61 + 4214630
ACAACGAAUGCGAGGGUUUGUCGACACGCUGAAAGAUCCCGCUCAUUCGGCGGGAUCUUUU
.........(((...(((....))).))).(((((((((((((.....))))))))))))) ( -23.20)
>Bclau.0 1708636 58 - 4303871
ACAACGUAUGCGAGCGUUUGUCUACAGUCUGAAAA-ACCGGCU--ACUGCCGGUUUUUUCU
(((((((......))).)))).........(((((-((((((.--...))))))))))).. ( -18.90)
>consensus
ACAACGAAUGCGAGGGUUUGUCGACACGCUGAAAA_UCCGGCU__UUUGCCGGAAUUUUUU
...((((((......)))))).........(((((.((((((......)))))).))))). (-10.62 = -11.40 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 3,178,989 – 3,179,047
Length 58
Sequences 3
Columns 61
Reading direction forward
Mean pairwise identity 77.22
Mean single sequence MFE -21.30
Consensus MFE -10.62
Energy contribution -11.40
Covariance contribution 0.78
Combinations/Pair 1.24
Mean z-score -2.94
Structure conservation index 0.50
SVM decision value 0.81
SVM RNA-class probability 0.857512
Prediction RNA

Download alignment: ClustalW | MAF

>Blich.0 3178989 58 + 4222334/0-61
ACAACGAAUGCGAGGGUUUGUCGACACGCUGAAAC-UCCGGCU--UUUGCCGGAGUUUUUU
.........(((...(((....))).))).(((((-((((((.--...))))))))))).. ( -21.80)
>Bsubt.0 3106218 61 + 4214630/0-61
ACAACGAAUGCGAGGGUUUGUCGACACGCUGAAAGAUCCCGCUCAUUCGGCGGGAUCUUUU
.........(((...(((....))).))).(((((((((((((.....))))))))))))) ( -23.20)
>Bclau.0 1708636 58 - 4303871/0-61
ACAACGUAUGCGAGCGUUUGUCUACAGUCUGAAAA-ACCGGCU--ACUGCCGGUUUUUUCU
(((((((......))).)))).........(((((-((((((.--...))))))))))).. ( -18.90)
>consensus
ACAACGAAUGCGAGGGUUUGUCGACACGCUGAAAA_UCCGGCU__UUUGCCGGAAUUUUUU
...((((((......)))))).........(((((.((((((......)))))).))))). (-10.62 = -11.40 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:21:03 2006