Locus 71

Sequence ID	Blich.0
Location	572,583 – 572,609
Length	26
Max. P	0.999992

overview

Window 3

Location	572,583 – 572,609
Length	26
Sequences	3
Columns	26
Reading direction	forward
Mean pairwise identity	69.23
Mean single sequence MFE	-6.00
Consensus MFE	-6.89
Energy contribution	-6.00
Covariance contribution	-0.89
Combinations/Pair	1.40
Mean z-score	0.58
Structure conservation index	1.15
SVM decision value	5.70
SVM RNA-class probability	0.999992
Prediction	RNA
WARNING	Sequence 1 too short.
WARNING	Sequence 2 too short.
WARNING	Sequence 3 too short.

Download alignment: ClustalW | MAF

>Blich.0 572583 26 + 4222334
CGUUGGUUCGAAUCCAGCUAGCCCAG
.(((((.......)))))........ (  -5.60)
>Bsubt.0 528592 26 + 4214630
CGUUGGUUCGAAUCCAGCUAGCCCAG
.(((((.......)))))........ (  -5.60)
>Bclau.0 891322 26 + 4303871
CGGCGGUUCGAGCCCGUCAUCCUCCA
.(((((.......)))))........ (  -6.80)
>consensus
CGUUGGUUCGAAUCCAGCUAGCCCAG
.(((((.......)))))........ ( -6.89 =  -6.00 +  -0.89)

alignment

secondary structure

dotplot

Window 4

Location	572,583 – 572,609
Length	26
Sequences	3
Columns	26
Reading direction	reverse
Mean pairwise identity	69.23
Mean single sequence MFE	-2.23
Consensus MFE	-2.54
Energy contribution	-2.10
Covariance contribution	-0.44
Combinations/Pair	1.25
Mean z-score	2.42
Structure conservation index	1.14
SVM decision value	2.98
SVM RNA-class probability	0.998017
Prediction	RNA
WARNING	Sequence 1 too short.
WARNING	Sequence 2 too short.
WARNING	Sequence 3 too short.

Download alignment: ClustalW | MAF

>Blich.0 572583 26 + 4222334
CUGGGCUAGCUGGAUUCGAACCAACG
........(.(((.......))).). (  -1.40)
>Bsubt.0 528592 26 + 4214630
CUGGGCUAGCUGGAUUCGAACCAACG
........(.(((.......))).). (  -1.40)
>Bclau.0 891322 26 + 4303871
UGGAGGAUGACGGGCUCGAACCGCCG
............(((.......))). (  -3.90)
>consensus
CUGGGCUAGCUGGAUUCGAACCAACG
........(.(((.......))).). ( -2.54 =  -2.10 +  -0.44)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:21:02 2006