Locus 69

Sequence ID	Bsubt.0
Location	3,193,492 – 3,193,586
Length	94
Max. P	0.999445

overview

Window 8

Location	3,193,492 – 3,193,586
Length	94
Sequences	3
Columns	96
Reading direction	forward
Mean pairwise identity	82.17
Mean single sequence MFE	-31.23
Consensus MFE	-33.07
Energy contribution	-30.97
Covariance contribution	-2.10
Combinations/Pair	1.26
Mean z-score	-1.13
Structure conservation index	1.06
SVM decision value	3.61
SVM RNA-class probability	0.999445
Prediction	RNA

Download alignment: ClustalW | MAF

>Bsubt.0 3193492 94 + 4214630
AUGGAGCCAAGGGGGCUCGAACCCCUGACCUCUACGCUGCCAGCGUAGCGCUCUCCCAGCUGAGCUAUGGCCCCGUAUGUA-ACGUCAUG-UUUAU
((((.(((((((((.......))))).....((((((.....)))))).((((........))))..)))).)))).....-........-..... ( -33.20)
>Bclau.0 3031149 90 + 4303871
AUGGAGCCUAGGGGGCUCGAACCCCUGACCUCAACGCUGCCAGCGUUGCGCUCUCCCAGCUGAGCUAAGGCCCCACACG-----GUUAUG-UAUGU
.(((.(((((((((.......))))).....((((((.....)))))).((((........))))..)))).)))....-----......-..... ( -32.00)
>Blich.0 3143410 96 + 4222334
AUGGAGCAUAGCGGGCUCGAACCGCUGACCUCUACACUGCCAGUGUAGCGCUCUCCCAGCUGAGCUAAUGCCCCGUAUAUUUGAGACAUGAUUUAU
((((.(((((((((.......))))).....((((((.....)))))).((((........))))..)))).)))).................... ( -28.50)
>consensus
AUGGAGCCUAGGGGGCUCGAACCCCUGACCUCUACGCUGCCAGCGUAGCGCUCUCCCAGCUGAGCUAAGGCCCCGUAUGU____GUCAUG_UUUAU
((((.(((((((((.......))))).....((((((.....)))))).((((........))))..)))).)))).................... (-33.07 = -30.97 +  -2.10)

alignment

secondary structure

dotplot

Window 9

Location	3,193,492 – 3,193,586
Length	94
Sequences	3
Columns	96
Reading direction	reverse
Mean pairwise identity	82.17
Mean single sequence MFE	-34.73
Consensus MFE	-35.05
Energy contribution	-32.83
Covariance contribution	-2.22
Combinations/Pair	1.23
Mean z-score	-1.43
Structure conservation index	1.01
SVM decision value	2.82
SVM RNA-class probability	0.997213
Prediction	RNA

Download alignment: ClustalW | MAF

>Bsubt.0 3193492 94 + 4214630
AUAAA-CAUGACGU-UACAUACGGGGCCAUAGCUCAGCUGGGAGAGCGCUACGCUGGCAGCGUAGAGGUCAGGGGUUCGAGCCCCCUUGGCUCCAU
.....-........-.......(((((((..((((........)))).((((((.....))))))......(((((....)))))..))))))).. ( -35.90)
>Bclau.0 3031149 90 + 4303871
ACAUA-CAUAAC-----CGUGUGGGGCCUUAGCUCAGCUGGGAGAGCGCAACGCUGGCAGCGUUGAGGUCAGGGGUUCGAGCCCCCUAGGCUCCAU
.....-......-----...(((((((((.(((((....))).((.(.((((((.....)))))).).)).(((((....)))))))))))))))) ( -36.20)
>Blich.0 3143410 96 + 4222334
AUAAAUCAUGUCUCAAAUAUACGGGGCAUUAGCUCAGCUGGGAGAGCGCUACACUGGCAGUGUAGAGGUCAGCGGUUCGAGCCCGCUAUGCUCCAU
......................(((((((.(((...(((.(((..((.((((((.....))))))......))..))).)))..)))))))))).. ( -32.10)
>consensus
AUAAA_CAUGAC____ACAUACGGGGCCUUAGCUCAGCUGGGAGAGCGCUACGCUGGCAGCGUAGAGGUCAGGGGUUCGAGCCCCCUAGGCUCCAU
......................(((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))).. (-35.05 = -32.83 +  -2.22)

alignment

secondary structure

dotplot

Window 0

Location	3,193,492 – 3,193,586
Length	94
Sequences	3
Columns	96
Reading direction	forward
Mean pairwise identity	82.17
Mean single sequence MFE	-31.23
Consensus MFE	-33.07
Energy contribution	-30.97
Covariance contribution	-2.10
Combinations/Pair	1.26
Mean z-score	-1.13
Structure conservation index	1.06
SVM decision value	3.61
SVM RNA-class probability	0.999445
Prediction	RNA

Download alignment: ClustalW | MAF

>Bsubt.0 3193492 94 + 4214630/0-96
AUGGAGCCAAGGGGGCUCGAACCCCUGACCUCUACGCUGCCAGCGUAGCGCUCUCCCAGCUGAGCUAUGGCCCCGUAUGUA-ACGUCAUG-UUUAU
((((.(((((((((.......))))).....((((((.....)))))).((((........))))..)))).)))).....-........-..... ( -33.20)
>Bclau.0 3031149 90 + 4303871/0-96
AUGGAGCCUAGGGGGCUCGAACCCCUGACCUCAACGCUGCCAGCGUUGCGCUCUCCCAGCUGAGCUAAGGCCCCACACG-----GUUAUG-UAUGU
.(((.(((((((((.......))))).....((((((.....)))))).((((........))))..)))).)))....-----......-..... ( -32.00)
>Blich.0 3143410 96 + 4222334/0-96
AUGGAGCAUAGCGGGCUCGAACCGCUGACCUCUACACUGCCAGUGUAGCGCUCUCCCAGCUGAGCUAAUGCCCCGUAUAUUUGAGACAUGAUUUAU
((((.(((((((((.......))))).....((((((.....)))))).((((........))))..)))).)))).................... ( -28.50)
>consensus
AUGGAGCCUAGGGGGCUCGAACCCCUGACCUCUACGCUGCCAGCGUAGCGCUCUCCCAGCUGAGCUAAGGCCCCGUAUGU____GUCAUG_UUUAU
((((.(((((((((.......))))).....((((((.....)))))).((((........))))..)))).)))).................... (-33.07 = -30.97 +  -2.10)

alignment

secondary structure

dotplot

Window 1

Location	3,193,492 – 3,193,586
Length	94
Sequences	3
Columns	96
Reading direction	reverse
Mean pairwise identity	82.17
Mean single sequence MFE	-34.73
Consensus MFE	-35.05
Energy contribution	-32.83
Covariance contribution	-2.22
Combinations/Pair	1.23
Mean z-score	-1.43
Structure conservation index	1.01
SVM decision value	2.82
SVM RNA-class probability	0.997213
Prediction	RNA

Download alignment: ClustalW | MAF

>Bsubt.0 3193492 94 + 4214630/0-96
AUAAA-CAUGACGU-UACAUACGGGGCCAUAGCUCAGCUGGGAGAGCGCUACGCUGGCAGCGUAGAGGUCAGGGGUUCGAGCCCCCUUGGCUCCAU
.....-........-.......(((((((..((((........)))).((((((.....))))))......(((((....)))))..))))))).. ( -35.90)
>Bclau.0 3031149 90 + 4303871/0-96
ACAUA-CAUAAC-----CGUGUGGGGCCUUAGCUCAGCUGGGAGAGCGCAACGCUGGCAGCGUUGAGGUCAGGGGUUCGAGCCCCCUAGGCUCCAU
.....-......-----...(((((((((.(((((....))).((.(.((((((.....)))))).).)).(((((....)))))))))))))))) ( -36.20)
>Blich.0 3143410 96 + 4222334/0-96
AUAAAUCAUGUCUCAAAUAUACGGGGCAUUAGCUCAGCUGGGAGAGCGCUACACUGGCAGUGUAGAGGUCAGCGGUUCGAGCCCGCUAUGCUCCAU
......................(((((((.(((...(((.(((..((.((((((.....))))))......))..))).)))..)))))))))).. ( -32.10)
>consensus
AUAAA_CAUGAC____ACAUACGGGGCCUUAGCUCAGCUGGGAGAGCGCUACGCUGGCAGCGUAGAGGUCAGGGGUUCGAGCCCCCUAGGCUCCAU
......................(((((((..((((........)))).((((((.....)))))).....(((((.......)))))))))))).. (-35.05 = -32.83 +  -2.22)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:21:00 2006