Locus 68

Sequence ID Banth.0
Location 245,003 – 245,123
Length 120
Max. P 0.978350
window407

overview

Window 7

Location 245,003 – 245,123
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -48.27
Consensus MFE -45.01
Energy contribution -44.57
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -3.08
Structure conservation index 0.93
SVM decision value 1.81
SVM RNA-class probability 0.978350
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 245003 120 + 5227293/0-120
AGCAGGGGAGCCCCUUGAGCCACUUGGGUACUUCUCUGUAUGGCUCCGCAGGUAGGACUCGAACCUACGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUACUGCGGAAUAAU
.(((((((((.(((..(.....)..)))..))))))))).....((((((((((((.......))))).....((((((.....))))))(((((.......))))).)))))))..... ( -48.20)
>Bcere.0 278398 120 + 5224283/0-120
AGCAGGGGAGCCCCUUGAGCCACUUGGGUACUUCUCUGUAUGGCUCCGCAGGUAGGACUCGAACCUACGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUACUGCGGAAUAAU
.(((((((((.(((..(.....)..)))..))))))))).....((((((((((((.......))))).....((((((.....))))))(((((.......))))).)))))))..... ( -48.20)
>Bhalo.0 558005 119 + 4202352/0-120
AGCAGGGGAGCCCCUUCAGCCACUUGGGUACUUCUCCAU-UGGCUCCGCAGGUAGGACUCGAACCUACGACCGAUCGGUUAACAGCCGAUUGCUCUACCACUGAGCUACUGCGGAAUGUU
.(.((((....)))).).((((..((((......)))).-))))((((((((((((.......)))))....(((((((.....)))))))((((.......))))..)))))))..... ( -48.40)
>consensus
AGCAGGGGAGCCCCUUGAGCCACUUGGGUACUUCUCUGUAUGGCUCCGCAGGUAGGACUCGAACCUACGACCGAUCGGUUAACAGCCGAUAGCUCUACCACUGAGCUACUGCGGAAUAAU
...((((....))))...((((..((((......))))..))))((((((((((((.......))))).....((((((.....)))))).((((.......))))..)))))))..... (-45.01 = -44.57 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:20:57 2006