Locus 65

Sequence ID Bsubt.0
Location 559,018 – 559,096
Length 78
Max. P 0.996733
window399 window400 window401 window402

overview

Window 9

Location 559,018 – 559,096
Length 78
Sequences 3
Columns 81
Reading direction forward
Mean pairwise identity 81.89
Mean single sequence MFE -18.37
Consensus MFE -15.27
Energy contribution -15.17
Covariance contribution -0.11
Combinations/Pair 1.13
Mean z-score -3.84
Structure conservation index 0.83
SVM decision value 2.74
SVM RNA-class probability 0.996733
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 559018 78 + 4214630
UUUAUACAAACAGGCUCUUUAUAUAGGGCCUGUUUUUUUAUGU---CUAUAUCAUACUCAAUAAAAAACCCUACUCAACGU
(((((..(((((((((((......)))))))))))...((((.---......))))....)))))................ ( -16.60)
>Blich.0 578017 81 + 4222334
UUUAUACAAACAGGCUCUCUAUGUAGAGCCUGUUUUUUUAUGUUCUCUGUAUAAUGCUUAAUAAGAAAACCUACUCAACGU
.(((((((((((((((((......)))))))))).............)))))))........................... ( -18.21)
>Bclau.0 902341 81 + 4303871
UUCAUAAAAACAGGCUCCUUAAAUAGGGCCUGUUUUUUUAUGUUCUCUGUAUCAUGCUCACUAAAAAACCUACUUGAACGU
.....((((((((((.(((.....)))))))))))))..((((((...(((...................)))..)))))) ( -20.31)
>consensus
UUUAUACAAACAGGCUCUUUAUAUAGGGCCUGUUUUUUUAUGUUCUCUGUAUCAUGCUCAAUAAAAAACCCUACUCAACGU
..((((.(((((((((((......)))))))))))...))))....................................... (-15.27 = -15.17 +  -0.11)

alignment

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secondary structure

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dotplot

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Window 0

Location 559,018 – 559,096
Length 78
Sequences 3
Columns 81
Reading direction reverse
Mean pairwise identity 81.89
Mean single sequence MFE -21.00
Consensus MFE -12.88
Energy contribution -13.00
Covariance contribution 0.12
Combinations/Pair 1.21
Mean z-score -3.41
Structure conservation index 0.61
SVM decision value 1.83
SVM RNA-class probability 0.979017
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 559018 78 + 4214630
ACGUUGAGUAGGGUUUUUUAUUGAGUAUGAUAUAG---ACAUAAAAAAACAGGCCCUAUAUAAAGAGCCUGUUUGUAUAAA
............((((..((((......)))).))---))(((...((((((((.((......)).)))))))).)))... ( -14.90)
>Blich.0 578017 81 + 4222334
ACGUUGAGUAGGUUUUCUUAUUAAGCAUUAUACAGAGAACAUAAAAAAACAGGCUCUACAUAGAGAGCCUGUUUGUAUAAA
..(((.((((((....)))))).))).(((((((.............((((((((((......))))))))))))))))). ( -24.41)
>Bclau.0 902341 81 + 4303871
ACGUUCAAGUAGGUUUUUUAGUGAGCAUGAUACAGAGAACAUAAAAAAACAGGCCCUAUUUAAGGAGCCUGUUUUUAUGAA
..((((..(((.((((......))))....)))...))))....(((((((((((((.....))).))))))))))..... ( -23.70)
>consensus
ACGUUGAGUAGGGUUUUUUAUUGAGCAUGAUACAGAGAACAUAAAAAAACAGGCCCUAUAUAAAGAGCCUGUUUGUAUAAA
..(((.((((((....)))))).)))....................((((((((.((......)).))))))))....... (-12.88 = -13.00 +   0.12)

alignment

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secondary structure

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dotplot

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Window 1

Location 559,018 – 559,096
Length 78
Sequences 3
Columns 81
Reading direction forward
Mean pairwise identity 81.89
Mean single sequence MFE -18.37
Consensus MFE -15.27
Energy contribution -15.17
Covariance contribution -0.11
Combinations/Pair 1.13
Mean z-score -3.84
Structure conservation index 0.83
SVM decision value 2.74
SVM RNA-class probability 0.996733
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 559018 78 + 4214630/0-81
UUUAUACAAACAGGCUCUUUAUAUAGGGCCUGUUUUUUUAUGU---CUAUAUCAUACUCAAUAAAAAACCCUACUCAACGU
(((((..(((((((((((......)))))))))))...((((.---......))))....)))))................ ( -16.60)
>Blich.0 578017 81 + 4222334/0-81
UUUAUACAAACAGGCUCUCUAUGUAGAGCCUGUUUUUUUAUGUUCUCUGUAUAAUGCUUAAUAAGAAAACCUACUCAACGU
.(((((((((((((((((......)))))))))).............)))))))........................... ( -18.21)
>Bclau.0 902341 81 + 4303871/0-81
UUCAUAAAAACAGGCUCCUUAAAUAGGGCCUGUUUUUUUAUGUUCUCUGUAUCAUGCUCACUAAAAAACCUACUUGAACGU
.....((((((((((.(((.....)))))))))))))..((((((...(((...................)))..)))))) ( -20.31)
>consensus
UUUAUACAAACAGGCUCUUUAUAUAGGGCCUGUUUUUUUAUGUUCUCUGUAUCAUGCUCAAUAAAAAACCCUACUCAACGU
..((((.(((((((((((......)))))))))))...))))....................................... (-15.27 = -15.17 +  -0.11)

alignment

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secondary structure

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dotplot

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Window 2

Location 559,018 – 559,096
Length 78
Sequences 3
Columns 81
Reading direction reverse
Mean pairwise identity 81.89
Mean single sequence MFE -21.00
Consensus MFE -12.88
Energy contribution -13.00
Covariance contribution 0.12
Combinations/Pair 1.21
Mean z-score -3.41
Structure conservation index 0.61
SVM decision value 1.83
SVM RNA-class probability 0.979017
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 559018 78 + 4214630/0-81
ACGUUGAGUAGGGUUUUUUAUUGAGUAUGAUAUAG---ACAUAAAAAAACAGGCCCUAUAUAAAGAGCCUGUUUGUAUAAA
............((((..((((......)))).))---))(((...((((((((.((......)).)))))))).)))... ( -14.90)
>Blich.0 578017 81 + 4222334/0-81
ACGUUGAGUAGGUUUUCUUAUUAAGCAUUAUACAGAGAACAUAAAAAAACAGGCUCUACAUAGAGAGCCUGUUUGUAUAAA
..(((.((((((....)))))).))).(((((((.............((((((((((......))))))))))))))))). ( -24.41)
>Bclau.0 902341 81 + 4303871/0-81
ACGUUCAAGUAGGUUUUUUAGUGAGCAUGAUACAGAGAACAUAAAAAAACAGGCCCUAUUUAAGGAGCCUGUUUUUAUGAA
..((((..(((.((((......))))....)))...))))....(((((((((((((.....))).))))))))))..... ( -23.70)
>consensus
ACGUUGAGUAGGGUUUUUUAUUGAGCAUGAUACAGAGAACAUAAAAAAACAGGCCCUAUAUAAAGAGCCUGUUUGUAUAAA
..(((.((((((....)))))).)))....................((((((((.((......)).))))))))....... (-12.88 = -13.00 +   0.12)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:20:53 2006