Locus 64

Sequence ID Bsubt.0
Location 558,648 – 558,767
Length 119
Max. P 0.907618
window398

overview

Window 8

Location 558,648 – 558,767
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.50
Mean single sequence MFE -27.97
Consensus MFE -27.40
Energy contribution -26.30
Covariance contribution -1.10
Combinations/Pair 1.12
Mean z-score -1.85
Structure conservation index 0.98
SVM decision value 1.05
SVM RNA-class probability 0.907618
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 558648 119 + 4214630/40-160
AAUAAAGAAGAAUUAUUUUUGUUCGGUGUAAAGGAUAGUAUGAAGAUUGACUUUUCGUCUUGAUGAUACUUUGGGCAAGGAUAGUA-UAUACUGUGUGGUUACACACUAGGAGGCAACAA
...........(((((((((((((((.(((..(...((.(((((((.....)))))))))...)..))).))))))))))))))).-....(((((((....))))).))..(....).. ( -28.00)
>Blich.0 577633 120 + 4222334/40-160
GAUAAAGGAGAAUUAUUUUUGUUCGGUGUAAAGGAUAGUAUGAAUAUUGACUUUUCGUCUUGAUGAUACUUUGGGCAAGGAUAGUAAUACAAUGUGCGGUAACGCACUAGGAGGCAACAA
...........(((((((((((((((.(((((((.(((((....))))).))))((((....))))))).)))))))))))))))....(...(((((....)))))...).(....).. ( -27.10)
>Bclau.0 901979 119 + 4303871/40-160
AAUAAAG-AGAAUUAUUUUUGUUCGGUGUAAAGGAUAGUAUGAAUAUUGACUUUUCGUCUUGAUGAUACUUUGGACAAGAGUAGUAAUAUAAUGUGUGGCAACACACUAGGAGGCAACAA
.......-...(((((((((((((((.(((((((.(((((....))))).))))((((....))))))).)))))))))))))))........(((((....))))).....(....).. ( -28.80)
>consensus
AAUAAAG_AGAAUUAUUUUUGUUCGGUGUAAAGGAUAGUAUGAAUAUUGACUUUUCGUCUUGAUGAUACUUUGGGCAAGGAUAGUAAUAUAAUGUGUGGUAACACACUAGGAGGCAACAA
...........(((((((((((((((.(((..(...((.(((((.........)))))))...)..))).)))))))))))))))........(((((....))))).....(....).. (-27.40 = -26.30 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:20:50 2006